Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1718 ATGGCGCTGATACAACAGGAAGAGATGGAGGAGCAAAGTGTGAATCCCTCTGAAACAGCAACTTCAAAATCATCGATCACCGCCGATGCCGATGCCGATGCCGATGGCTTTGAAACTGCCAGTGACGCCGATCTCAGCAGCGACAACGACGATGAAGGAGGAGCTAGCAGTCGCGATGGGGATGCGCATAAAGAACAGCCTCGACAACATAGTAGTCAAGAGCAAGAGCAGGGTATTCCTCGGAGAAGTGATTCTTCCGAAGACTCCTCAAAAAATGAGGAATTGGGACAGAATGCATTGGCTCAAGCAAATGAAGCAAAACTAGAAGGGAATAAATTGTTTGGAGATGGACAGTATGAGGAGGCACTATCACAATATGAACTTGCTTTACAAGTTGCACCAGACATCCCTTCATCTGTGGAAATACGTTCAATATGTCATGCAAACCGTGCTGTGTGCCTTATGAAACTGGGGAAATATGAGAGCACAATCAAAGAATGTACAAAAGCATTGGAACTCAATCCTGTGTATGCTAAAGCTTTGGTAAGAAGAGGAGAGGCTCATGAAAAGCTTGAACATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCACAAATGATCAAGCTAAGAAAACCATTCGCCGACTGGAGCCCCTTGCTGCAGAAAAGAGGGAAAAGATGAAGGAAGAAATGATTGCAAAACTAAAAGATACAGGCAATTCTCTGTTGGGCCGCTTTGGGATGAGCATTGACAACTTCAAAGCTGTTAAAGATCCAAATACTGGTTCCTATTCTATCTCATTCCAACGCTGA 828 0.4396 MALIQQEEMEEQSVNPSETATSKSSITADADADADGFETASDADLSSDNDDEGGASSRDGDAHKEQPRQHSSQEQEQGIPRRSDSSEDSSKNEELGQNALAQANEAKLEGNKLFGDGQYEEALSQYELALQVAPDIPSSVEIRSICHANRAVCLMKLGKYESTIKECTKALELNPVYAKALVRRGEAHEKLEHFEEAIADMKKILEIDPTNDQAKKTIRRLEPLAAEKREKMKEEMIAKLKDTGNSLLGRFGMSIDNFKAVKDPNTGSYSISFQR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1718 275 MobiDBLite consensus disorder prediction 1 95 - -
Glsi06g1718 275 SUPERFAMILY TPR-like 102 221 IPR011990 GO:0005515
Glsi06g1718 275 SMART tpr_5 144 177 IPR019734 GO:0005515
Glsi06g1718 275 SMART tpr_5 103 136 IPR019734 GO:0005515
Glsi06g1718 275 SMART tpr_5 178 211 IPR019734 GO:0005515
Glsi06g1718 275 Pfam Tetratricopeptide repeat 178 211 IPR013105 -
Glsi06g1718 275 Gene3D Tetratricopeptide repeat domain 58 242 IPR011990 GO:0005515
Glsi06g1718 275 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 1 275 - -
Glsi06g1718 275 Pfam Tetratricopeptide repeat 146 175 IPR001440 GO:0005515
Glsi06g1718 275 MobiDBLite consensus disorder prediction 8 28 - -
Glsi06g1718 275 MobiDBLite consensus disorder prediction 51 91 - -
Glsi06g1718 275 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Glsi06g1718 275 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1718 Glsi-ChrGlsi06 63967566 63969939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1718 103 234 Calmodulin-binding Proteins AT3G25230 38.571 1.23e-15 74.7