Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1716 ATGGAAGATGAGGAAAAAGCAGCATCAAGAGTATTTCCATGTCTATTCTGCTCAAGAAAATTTTGCAGTTCTCAAGCTTTAGGAGGGCACCAAAATGCGCACAAGAAAGAGAGAACAGCCGCAAGAAAGGCTAAAAGGGCTTCCGAGTATTCTTCTATTATTCCCTTTCCTGCTCCCATGCCGCACCCTATGGCTTTTGCTCCAACCCATCGTCAACTGGGTATTAATTTGAATCCTTCAATGTTCATTACTGCTCATTCTGCAAATCTTCGTTCCTTCCAAAGCCATCAAATTTCAGACCAGTTTGGATCAAATGGTGCACCCAGATTTGAGAATGCTCTGTTTTATGAGGGAAGTTGTTCAAGCTCTCGATTTTGTGAAGATGATGAGAGAAGCTTCGTGAACTGGCAAAGGAGTTTGTCATTGAATAATTGCAAAGAGAAAAAGCAGAAACTTGATTTGTCTCTTCATTTATAG 477 0.4088 MEDEEKAASRVFPCLFCSRKFCSSQALGGHQNAHKKERTAARKAKRASEYSSIIPFPAPMPHPMAFAPTHRQLGINLNPSMFITAHSANLRSFQSHQISDQFGSNGAPRFENALFYEGSCSSSRFCEDDERSFVNWQRSLSLNNCKEKKQKLDLSLHL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1716 158 PANTHER ZINC FINGER PROTEIN JAGGED 8 158 IPR045320 GO:0003700
Glsi06g1716 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Glsi06g1716 158 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Glsi06g1716 158 Gene3D Classic Zinc Finger 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1716 Glsi-ChrGlsi06 63949729 63950205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1716 3 158 C2H2 Transcription Factor Family AT5G48890 40.764 1.42e-16 70.9