Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1685 ATGAGTTGCTTTCCATGTTTTTCATGCCATGAAAAGAAAGCAACGCCGAAAAAACCCAAACATGTAAGTAGGGCACAAATGCATTCAACTCAACCTCAAACGGAAGCACTACTTCCTCAACCACGGCAAGATAATCATTATTCTAAGCCAACAGAATCTAGAACAACTAATAATAACGCCAACAAAGAGACTGGCAACAATAACATTGCTGCAGAAACTTTCACGTTTCGGGAATTGGCTGCCGCGACGAAGAACTTCCGGCAGGAATGCCTGATAGGTGAAGGTGGATTTGGAAGAGTTTATAAAGGAAGACTTGATAAAAACAACCAGGTTGTAGCCGTGAAGCAACTTGACAGGAATGGATTGCAAGGGAACAGGGAGTTCCTTGTTGAAGTGTTGATGTTGAGCCTCTTACACCATCAAAATCTAGTGAACCTTATTGGATATTGTGCTGATGGAGATCAGAGGCTATTGGTGTATGAATACATGCCATTGGGATCTCTAGAAGATCATCTTCTTGATCTTGATCCACATCAAAAGCCATTGGATTGGTTCACCAGAATGAAAATAGGATTGGGTGCATCTAAAGGTCTCGAGTATTTGCATGATAAGGCCAACCCTCCTGTCATCTACCGAGACTTGAAGTCCTCCAACATCTTGCTAGACAACGAATTTAATGCAAAACTCTCTGATTTTGGACTAGCCAAGCTAGGACCTACAGGAGACAAGTCCCATGTGTCTTCAAGAGTAATGGGAACTTATGGATACTGTGCTCCTGAGTATCAAAGAACTGGTCAGCTTACTGTAAAATCAGATGTATACAGCTTCGGAGTTGTTTTGCTCGAACTCATCACCGGAAGGAGAGTCATCGACAACACAAGACCCACACGAGAGCAAAATCTAGTTTCTTGGGCACAACCAGTATTTAAGGAACCTCATAGATACATAGAGTTAGCGGATCCCCTTCTTCAGAAAAACTTCCCAGTGAGAGCATTCAATCAAGCAGTGGCAGTAGCAGCCATGTGCCTCAACGAGGAGCCCAGTGTCCGGCCCTTGATAAGCGACGTAGTCACGGCTCTTACTTTTCTGGGGTCAGACTTGGATCAAACTTCCTCAGGTTCTGCTGCCATTGACAATATTCCCTCATCCCCACCATCTGAGCAACAAGAAGGAAATGGTGCAAATTTGAACCTTATTCATGATGATAGTGTTGCTGAACGCCAAAGAGCTGTTGCCGAAGCCATCAAGTGGGGTTCAGCTTCTAGGACACAATCAAAAGCAGCAGCAGCAGCAGCTGCTGCTGCTGCTGCCACACACACACACTCTGCAAGTGCTGCCTCTTTGTAA 1347 0.4462 MSCFPCFSCHEKKATPKKPKHVSRAQMHSTQPQTEALLPQPRQDNHYSKPTESRTTNNNANKETGNNNIAAETFTFRELAAATKNFRQECLIGEGGFGRVYKGRLDKNNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLDPHQKPLDWFTRMKIGLGASKGLEYLHDKANPPVIYRDLKSSNILLDNEFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRVIDNTRPTREQNLVSWAQPVFKEPHRYIELADPLLQKNFPVRAFNQAVAVAAMCLNEEPSVRPLISDVVTALTFLGSDLDQTSSGSAAIDNIPSSPPSEQQEGNGANLNLIHDDSVAERQRAVAEAIKWGSASRTQSKAAAAAAAAAAATHTHSASAASL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1685 448 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Glsi06g1685 448 MobiDBLite consensus disorder prediction 25 68 - -
Glsi06g1685 448 MobiDBLite consensus disorder prediction 13 68 - -
Glsi06g1685 448 PANTHER OS07G0668900 PROTEIN 6 369 - -
Glsi06g1685 448 MobiDBLite consensus disorder prediction 373 394 - -
Glsi06g1685 448 Gene3D Transferase(Phosphotransferase) domain 1 163 377 - -
Glsi06g1685 448 Pfam Protein kinase domain 88 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1685 448 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Glsi06g1685 448 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
Glsi06g1685 448 FunFam Serine/threonine-protein kinase PBS1 163 377 - -
Glsi06g1685 448 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1685 448 SUPERFAMILY Protein kinase-like (PK-like) 72 372 IPR011009 -
Glsi06g1685 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Glsi06g1685 448 CDD STKc_IRAK 92 361 - -
Glsi06g1685 448 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1685 Glsi-ChrGlsi06 63390899 63394286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1685 1 431 Glycoside Hydrolase AT3G07070 66.895 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi06g1685 Pkinase 4.5e-47 CL0016