Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1680 ATGAAAAAAATCTCAAGAGAGTGGAATGTGATCTACTGCTTTTTACAGGGAATTGATCAACTACGGACTAGTTTAAGTGTACAGGCTCAGAAACCTAATTTGACAAGCCAAAACCAGTTTCTTTTGGCGTCACAACAGCAGCAGGTCTTGGCGCAGGCTCAGGCACAAAATAATATTGGAAATTCTGCTCATTATGGTGATATGGATCCTCGTAGACTTGGTGGTATTCCAAGAGGTAGCTTGAGTGCAAAGGATGGTCAATCCACCAGGAATGATGCATCTTTGTGCTCCCAAGTGCAATCTGGTTCACCTAAGAATAGCAGAAAAAGAAAACAGCATTCTTCCTCTGGACCTGCCAACAGTACGGGTACTGCAAACACAGTGGGTCCTTCAGCTAATTCACCACCATCAACGCACACACCTGGTGACGGAATAAATACTGGTAGTAGCATGCAGAATGTTAATAGTGTGCCAAAGAGCTTGATGATGTATGGTACTGACGGGACAGGAGGCATTGCATCATCTTCAAATCTGCTGGAGGAAATTGAACGATTTGGAGATGTTGGTGCCTTGGATGATAATGTGGAGTCCTTTCTATCAAATGATGGAGGAGATGGTGGGAATCTATATGGAACAATAAAACAAAGTCCTGCTGAACACCAAAAGGAATCTTCAAAAGGTAACTTTTATGGCTTTATCTCTTCTGCGAGTGTAAAAGGTATTGTTGGGAAAGAACCTTCAACTAAATTCTCCATTTCAGGTTTCACCTTTGCTGAATTTGGTTGTATACGAACGAGAAATAGCAAGGTTACTTGCTGTCATTTTTCTTCAGATGGAAAGTTGCTTGCCAGTGCTGGACATGATAAGAAGGTTGTCCTCTGGAACATGGAAAATTTACAAACAGAGAGCACTCCTGAAGAACACAAATCAGTGATTACAGATGTCCGTTTTAGACCAAACTCATCTCAGTTGGCAACAGCCTCGGTTGATAAATCTGTGCGACTATGGGATGCAACTAATCCTAGCTATTGTTTGAAAGAATATAGTGGGCACAGTTCAGCTGTTGTGTCTCTTGATTTCCACCCTAAGAAGACTGATCTTTTCTGTTTCTGTGATACGGACAATGAAATTCGCTATTGGAATATTACTTCATCCTCCTGCACTCGTGTATCTAAGGGAGCTACTGCACAAGTGAGGTTTCAGCCACGACTGGGACAACTACTGGCAGCAGCTTCTGATAAAGTGGTGTCAATTTTTGATGTCGAAACTGACAGACAAATTTCCCCATTACTGGGTCATCCTGAACCGGTGAACTATATTTGCTGGGACGCAAATGGAGATTACTTGGCCACCGTGAGTCAGAACTTGGTGAAGATTTGGTCATTGACCTCAGGAGATTACATTCAGGAGCTCAGCTCTACGGGAAACCAGTTTCATTCCTGTGTCTTCCATCCAAGTTATTCAACTTTATTGGTGATTGGAGGGATTTCTTCCTTGGAGTTGTGGAACATGGCAGAGAACAAAAGCATGACAATCCCAGCACATGAGAGTATAATCTCTGCTCTGGCTCAGTCTCCTGTCACTGGAATGGTTGCCTCAGCAAGTCATGACCACTCTGTAAAGTTGTGGAAATAG 1635 0.4281 MKKISREWNVIYCFLQGIDQLRTSLSVQAQKPNLTSQNQFLLASQQQQVLAQAQAQNNIGNSAHYGDMDPRRLGGIPRGSLSAKDGQSTRNDASLCSQVQSGSPKNSRKRKQHSSSGPANSTGTANTVGPSANSPPSTHTPGDGINTGSSMQNVNSVPKSLMMYGTDGTGGIASSSNLLEEIERFGDVGALDDNVESFLSNDGGDGGNLYGTIKQSPAEHQKESSKGNFYGFISSASVKGIVGKEPSTKFSISGFTFAEFGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNMENLQTESTPEEHKSVITDVRFRPNSSQLATASVDKSVRLWDATNPSYCLKEYSGHSSAVVSLDFHPKKTDLFCFCDTDNEIRYWNITSSSCTRVSKGATAQVRFQPRLGQLLAAASDKVVSIFDVETDRQISPLLGHPEPVNYICWDANGDYLATVSQNLVKIWSLTSGDYIQELSSTGNQFHSCVFHPSYSTLLVIGGISSLELWNMAENKSMTIPAHESIISALAQSPVTGMVASASHDHSVKLWK 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1680 544 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Glsi06g1680 544 CDD WD40 267 544 - -
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 337 - -
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 512 544 - -
Glsi06g1680 544 Pfam WD domain, G-beta repeat 509 544 IPR001680 GO:0005515
Glsi06g1680 544 Pfam WD domain, G-beta repeat 344 381 IPR001680 GO:0005515
Glsi06g1680 544 Pfam WD domain, G-beta repeat 429 461 IPR001680 GO:0005515
Glsi06g1680 544 Pfam WD domain, G-beta repeat 268 295 IPR001680 GO:0005515
Glsi06g1680 544 Pfam WD domain, G-beta repeat 303 337 IPR001680 GO:0005515
Glsi06g1680 544 SUPERFAMILY WD40 repeat-like 261 544 IPR036322 GO:0005515
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 337 IPR001680 GO:0005515
Glsi06g1680 544 MobiDBLite consensus disorder prediction 113 154 - -
Glsi06g1680 544 Gene3D - 396 544 IPR015943 GO:0005515
Glsi06g1680 544 Gene3D - 262 395 IPR015943 GO:0005515
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Glsi06g1680 544 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Glsi06g1680 544 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Glsi06g1680 544 PRINTS G protein beta WD-40 repeat signature 531 544 IPR020472 -
Glsi06g1680 544 MobiDBLite consensus disorder prediction 82 105 - -
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 512 544 IPR001680 GO:0005515
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 390 IPR001680 GO:0005515
Glsi06g1680 544 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 14 544 IPR044716 GO:0003714
Glsi06g1680 544 MobiDBLite consensus disorder prediction 61 154 - -
Glsi06g1680 544 SMART WD40_4 464 503 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 505 544 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 384 420 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 256 295 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 341 381 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 298 337 IPR001680 GO:0005515
Glsi06g1680 544 SMART WD40_4 423 461 IPR001680 GO:0005515
Glsi06g1680 544 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1680 Glsi-ChrGlsi06 63341596 63347733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1680 281 509 U-box Gene Family AT2G33340 28.870 5.19e-15 75.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1680 06 63341596 63347733 Glsi06g1680 06 63341596 63347733 ECH