Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1643 ATGGAAGGCCGCAGGAGGGTAACACTTTATGAACAAATGATGGCAGGGGACAGCAGCCGAGACTCGCTAGCCGGCTTGACCCTCCACGATATGATGGAAAACCAGAAGAGAGCAGCCGCGTCGAGCCGCGAGCTTAGCAGCCGAACTCTCCTAAATATTATCAGAGAGGACGAATCCAACAAGAAGGACCGGAAGTCTTGGAAAGTCTTCAGGGACAAGCTTCTGCTCAAGCGCGCCGGATCTGCCTGGTCTTCCTCAATCTGTATCGCGGCCTCGGATATCCCTGTCCTTAACCAAAATAACGGCAACTCGCGTCTGAACTCGGTGACTCTCTCCCACTCGGACGAGTCAACTCAGCACGTGGCTCACGAATCCGACGACATGGTGCACACCATGGGTTCCGACGCTCCGGCTCCAAGTACCAGGCCCCAATTCGCGCGCCCAAGCTTCACCCGACAAGAATATCCACTAAACGCTGCCAACTCCGGCGAATCCTCCGGGAACTCAACGAAGCTAAGATCCCTAATGTCGCGCCAAGACTCCATGCGCGTCACGGTGCTTGCTGATTCCTTACGGCGAGACCGCGAGGTGACTTACTGGGATTGTTTTGGCAGCGACGACTATGGATCCGACTACGACGACCCTGATCTGGCGAGAGAAGGAACGCGCCGCCTATCTGCTGCTATATCAGAGGAGAGAGCATTGTCTGCCAGAGAAGCTGTGGCTGCCCAGGAAGCAGCGGAGGCGGCGGCGGCGGCGGAAGAGGACGAGGTGTCATCTGGGGCGGAGCCGGTGAGGATGTCGCTGATGGATTTGCTGGAGGAGACTGATGGGCAAATGGGGTTGGAGGGTTACAGATACAGAATGGTAGATGATGAAGTGTATGTGGAAGAAGAAGAGGAAGTTCGGGGAGAGGAATTCAAAGAAGGGAGTGTGATTGTGGAGCACAATTGCTGTGTGTGTATGGTGAGGCATAAAGGGGCAGCGTTCATACCATGTGGTCACACTTTTTGCAGGCTCTGTTCAAGGGAGCTTTGGGTGAGTAGGGGGAATTGCCCACTCTGCAACAATTTTATTTTGGAAATTCTTGACATTTTCTGA 1101 0.5431 MEGRRRVTLYEQMMAGDSSRDSLAGLTLHDMMENQKRAAASSRELSSRTLLNIIREDESNKKDRKSWKVFRDKLLLKRAGSAWSSSICIAASDIPVLNQNNGNSRLNSVTLSHSDESTQHVAHESDDMVHTMGSDAPAPSTRPQFARPSFTRQEYPLNAANSGESSGNSTKLRSLMSRQDSMRVTVLADSLRRDREVTYWDCFGSDDYGSDYDDPDLAREGTRRLSAAISEERALSAREAVAAQEAAEAAAAAEEDEVSSGAEPVRMSLMDLLEETDGQMGLEGYRYRMVDDEVYVEEEEEVRGEEFKEGSVIVEHNCCVCMVRHKGAAFIPCGHTFCRLCSRELWVSRGNCPLCNNFILEILDIF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1643 366 Pfam Zinc finger, C3HC4 type (RING finger) 315 359 - -
Glsi06g1643 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 366 IPR013083 -
Glsi06g1643 366 ProSiteProfiles Zinc finger RING-type profile. 318 356 IPR001841 -
Glsi06g1643 366 PANTHER OS01G0917900 PROTEIN 19 366 - -
Glsi06g1643 366 CDD RING-HC 318 355 - -
Glsi06g1643 366 SUPERFAMILY RING/U-box 301 362 - -
Glsi06g1643 366 SMART ring_2 318 355 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1643 Glsi-ChrGlsi06 62698992 62700092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1643 46 366 C3H Transcription Factor Family AT3G07120 40.517 1.31e-46 160