Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1631 ATGGATATCTTCAATCAAACCAAGAAAACCACAACCACAGGTCGCAAGAAGATCGAGATAAAGAAGATTGACAAGGATGCCAACAAGCAAGTCACCTTCTCAAAACGACGTGCCGGATTGTTCAAGAAAGCAAGCGAGCTCTGCGTTTTATGCAACGCTCAGCTTGCCGTGATTGTATTCTCTCCGGCGGACAAAGTCTTCTGCTTCGGCCAACCCAACGTGGAAGCCATCCTCAGTCGCTATCTCAGAGGAACTGCCGAGTCTGAGCCGGCCCCGGCACCAGGAGACAGTTCAGGATTGTCCTATGAAGAACTTAACAGGCAGCACGAGGAGGCGATGAAGGCATTGGAGATGGAGAAGCAGCAGTTGGCGGAGATTGAGAGTTTGGCTAAGGTTTGGAATAGAGGGAACTGGTGGGAAGAGTCCATTGATGAGATGGATTTAGAACAGTTAGAGCAATATACAGAGGCCATGCATGAGTTGAGGAGGAAGGTGGCTGCAAGGGCAGATGAATTGATGATGAGGGTTGCCATGATCCCTTCGTCTTCTTTTTTCGGGGGAAGTTCCTTAGGCGCTCTTCCCGGGGTAAGTGGTACTTATGGTGGTTTCGTCAACCAGTTTGGTGGCGATTTTGGTGATAGAAACTCTGGATTTTGA 657 0.4916 MDIFNQTKKTTTTGRKKIEIKKIDKDANKQVTFSKRRAGLFKKASELCVLCNAQLAVIVFSPADKVFCFGQPNVEAILSRYLRGTAESEPAPAPGDSSGLSYEELNRQHEEAMKALEMEKQQLAEIESLAKVWNRGNWWEESIDEMDLEQLEQYTEAMHELRRKVAARADELMMRVAMIPSSSFFGGSSLGALPGVSGTYGGFVNQFGGDFGDRNSGF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1631 218 Gene3D - 26 92 IPR036879 GO:0003677|GO:0046983
Glsi06g1631 218 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
Glsi06g1631 218 SUPERFAMILY SRF-like 14 85 IPR036879 GO:0003677|GO:0046983
Glsi06g1631 218 Coils Coil 151 171 - -
Glsi06g1631 218 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Glsi06g1631 218 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Glsi06g1631 218 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Glsi06g1631 218 Coils Coil 102 129 - -
Glsi06g1631 218 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Glsi06g1631 218 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Glsi06g1631 218 PANTHER MADS BOX PROTEIN 15 166 - -
Glsi06g1631 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1631 Glsi-ChrGlsi06 62444539 62445195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1631 12 189 Type I MADS-box Gene Family AT5G60440 38.830 6.03e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi06g1631 SRF-TF 5.4e-23 No_clan