Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1608 ATGAGCAATTGTTCTGGCAGGGGGCTTGCTCTCAGAAGTTACCGTCGGAGGAAGGTAGTCTTGGACTTGGATCTTAACAGTGCTCCGCCTGGTGAGAATCAGGAGCAGGGGGGACCTTCGACTGAATCAGGGCCTCAAGTAGTTGAAGGTGTCCAGCATCCACAGGTAGTACAGCCTATTGATGTGGAGGCCATTGATGATGATGTTGTTGAATCTACACCTAGGGCTTTTGCTGAGGCTAGAAACAATTCGAGAAGAAATCGTGGAAGGACTATAGTTGATGTGGATTTAGAAGATCGGAATAGGGTAACCAATAATAATCTCAACAAACGTGGAAGAGATTCTCTAAACCAAACAATTATTAATTGTGATCTATATATAAACTTGGAAGGCAGTAGCAGTTCCACGGGGGAGAATGCACCTGTACCTCAGCCAGTCTTTAACTGTCCAATATGTATGGCCCCCTTCGTTGAAGAAATGTCGACAAGGTGTGGTCATATTTTCTGTAGGAATTGCATTAAGGCTGCAATACGTGCACAGGCCAAATGCCCTACATGTAGAAAAAAGTTAAATAAGACTGCATTAAGGAGAACTGGGGATGGAAGAAACTTCATAATACCTTGGAGGCCGCTGAGTTGCAATGCAGTTTCCAATGTTAGTAGCAGATGCATTTGA 675 0.4415 MSNCSGRGLALRSYRRRKVVLDLDLNSAPPGENQEQGGPSTESGPQVVEGVQHPQVVQPIDVEAIDDDVVESTPRAFAEARNNSRRNRGRTIVDVDLEDRNRVTNNNLNKRGRDSLNQTIINCDLYINLEGSSSSTGENAPVPQPVFNCPICMAPFVEEMSTRCGHIFCRNCIKAAIRAQAKCPTCRKKLNKTALRRTGDGRNFIIPWRPLSCNAVSNVSSRCI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1608 224 Pfam Zinc finger, C3HC4 type (RING finger) 148 186 - -
Glsi06g1608 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 210 IPR013083 -
Glsi06g1608 224 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Glsi06g1608 224 PANTHER ELFLESS, ISOFORM B 10 197 - -
Glsi06g1608 224 SMART ring_2 149 186 IPR001841 -
Glsi06g1608 224 ProSiteProfiles Zinc finger RING-type profile. 149 187 IPR001841 -
Glsi06g1608 224 SUPERFAMILY RING/U-box 148 192 - -
Glsi06g1608 224 MobiDBLite consensus disorder prediction 29 47 - -
Glsi06g1608 224 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1608 Glsi-ChrGlsi06 61810705 61816591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1608 12 197 C3H Transcription Factor Family AT5G48655 43.005 5.87e-37 127