Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1603 ATGTCATTTCCATTTTGGTCCAAACACCTTCTTGCCATACTTATCTTCTATGTAAACTTGCTTTGGCTGCCACCTACCAGAGCTGCATCTGCATTAGAAAACGAGACTGATTATTTGGCATTGCTCAAGTTTAAAGAATCAATATCCAATGACCCATATGAAATCTTGAGCTCTTGGAATAGTTCAAACCACTTCTGCAGCTGGCATGGAATCACATGCAGCCGCCAGCATCAAAGAGTGACTGAGTTGACGTTGCAAGGATATCGATTGCGTGGGATCATATCACCCCATGTTGGCAACCTCTCCTTCCTGAGAAACCTCTACCTCCAGACCAACAGTTTCCACGGAGAAATCCCACCAGAGTTGGGTCTTTTGTTCAGACTGCAGCAACTCTCTCTGACGGATAACACATTGACAGGGGAGATTCCTATCAACTTGACAGGTTGCTCTGAACTCAGGCAGTTAAATTTGTCAAGCAATGGTTTTACAGGCAAAATACCATCTGAGCTTGGTTCTCTTAGGAAGCTTGAAAAGTTGAACATTTCTACAAACAAGTTAACTGGAGAAATCCCAGCTTCCATATGGAATCTTTCTTCCCTTGATGGTCTTTCCATTGCTTTTAATAACTTGGAAGGGAGAATACCAGAAGAAATACGCCTTTTGAAGAACTTGAGAATTTTATCAATAGCTGGGAACAAATTGTCTGGCAAGCTTCCTTCTTCACTTTACAATATGTCATCCTTCACTTACTTATCATTAGCAGATAATCAGCTGAATGATACTCGGCTTCCAGACGACATGTTCTCCACCCTGTTTAATTTGCAAGATTTTGGTATAGGTGGGAATCAGATTTCAGGTTCAATCCCAACTTCCATCACAAATGCATCTTCTCTTAAATTATTTGATATTGGTTTGAATTATTTTGTTGGAAAAGTTCCAAATCTAGGAAACCTACAAGATCTTCGGTGGCTAAATCTGAACGCTAATACTCTGGGCAGCAGTTCAAATGATGACTTGGGTTTTATAACATCTCTGGAAAACTGTAGTAAACTGGAAAGGTTGACGATGTATGGCAACAAACTTGGAGGTCTTTTACCCAGCTCCATAGGCAATTTGTCGACCCGACTCATTAAAATATACCTTGGTGATAATCAGATATATGGAACTATTCCTGCAACTTTAGGAAGATACACAAATTTAATTGGCTTCGTTATTGAATATAACCAGTTTACAGGCACAATTCCAGATTATTTTGGCAAGTTTCAAAAGATGCAAGCACTGGCCTTAGGGGGAAACCAACTCTCAGGAGAGATACCAGCCTCCTTCGGCAACCTCAGCGAATTGTTTGAACTAAGCCTTTCAAGGAATATGCTTGAAGGAAAAATTCCATCCATTTTTGGAAATTCGAAATTTTTGCAGCATCTAGACCTTTCAGAAAACAAAATTAGTGGAGCTATTCCCTTGCAGGTTTTTAGTCTTTCCTCCTTGTCCACCTTATTGGACTTATCTCACAACTCATTGTATGGCTCTCTGCCTACTGAGGTGGGAACCCTTAAAAACCTTTTCACCTTGGACATCTCTGAAAACTATCTTTCTGGGGAGATTCCTGGGACCATTGGAAAGTGCTTAGGTATGGAAAAACTTAACTTACAGGGAAATTTGTTCAGCGGAACCATGCCTCCATCATTATCTTCATTGAAAGGCCTTAAGCATTTAGATCTATCCCGAAACAAATTGTCTGGATCAATTCCAACAGGTTTACAGAACATTTCTGTCCTTGAATACTTGAATGTTTCTTCTAATTTGTTGGATGGTGTGGTACCAACAGAAGGGGTTTTCAGAAATGCAAATGCAATATTTGTGGCAGGTAATAAACTTTGTGGGGGTATCTCAAAGCTGCATCTCCCACCATGCCCTAACAAAGTTGTGACACAAAGTAAACATCATAAATTGAAGCTCATAGTAATTCTAATTTCTGTTGTTGCTTGTCTTCTGTTGTCATCTTTTCTTGCTATCTATTGGAGGAGGAACAGAAGTATAAAATCATCTTCCACTTCATCAACAATTGACCAGCTTTCTAGGGTGTCATACCAGAGCCTACACAATGGAACAGAAGGATTCTCAACCAACAATTTGATAGGATCTGGGAGTTTTGGCTCTGTGTATAAGGGGAGGTTACAATCGGAAGACAAACTTGTTGCTATAAAAGTCCTAAACCTTCAAAAAAAGGGAGCTCATAAAAGTTTCATTTCTGAATGTGACGCTCTTAAAATTATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGCTCAAGCATAGATTATAAAGGCCAAGAATTCAAAGCACTAGTCTTTGAGTACATGTCAAATGGAAGCCTAGAAAATTGGTTGCATCCTGGTACAGAAAGTGCAGACCAGCCTCAAACTTTGGATCTTAGTCAAAGATTAAATATTCTAGTCGACATTGCTTCTGCACTGCATTATCTTCACTCTGAATGTGAGCAACCTATTGTACACTGTGATTTAAAGCCAAGAAATGTGCTTCTTAATGATGATATGGTTGCTCATGTGAGTGATTTTGGCCTAGCAAGACTTCTCTCCACCCTTAATGGCAGCTCTCAGAAGCAAAGCAGCACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCGGAGTATGGAGTGAGTTCTGAGGTGTCGACACAGGGTGACGTATATTCTTTTGGAATTCTAATTTTGGAAATGCTAACTGGAAAAAGACCCACAGAAGAAATGTTCAAAGATGGTCACAATCTCCATAGCTATGTGAAAACTGCATATCCAAGTAACCTTTTGGAGATTGTGGACTTAGTCGTTCTACCAAAACAAATAAAACAGACAGCAACAGTAGCATCAGTAGAAATCAACATGGAGCAGCTGAGCCTTGTGCATCCTAAAGAAGAGAAGTCTATATTTTCACTATTTAGCATTGGACTTGCTTGCTCAGTAGAGTCACCAAAGGAAAGATTGAATATGATGGATGTCACAAGGGAGCTAAATCTGATTAGAAATGGTTTTCGTTTTGGCTAA 3072 0.3958 MSFPFWSKHLLAILIFYVNLLWLPPTRAASALENETDYLALLKFKESISNDPYEILSSWNSSNHFCSWHGITCSRQHQRVTELTLQGYRLRGIISPHVGNLSFLRNLYLQTNSFHGEIPPELGLLFRLQQLSLTDNTLTGEIPINLTGCSELRQLNLSSNGFTGKIPSELGSLRKLEKLNISTNKLTGEIPASIWNLSSLDGLSIAFNNLEGRIPEEIRLLKNLRILSIAGNKLSGKLPSSLYNMSSFTYLSLADNQLNDTRLPDDMFSTLFNLQDFGIGGNQISGSIPTSITNASSLKLFDIGLNYFVGKVPNLGNLQDLRWLNLNANTLGSSSNDDLGFITSLENCSKLERLTMYGNKLGGLLPSSIGNLSTRLIKIYLGDNQIYGTIPATLGRYTNLIGFVIEYNQFTGTIPDYFGKFQKMQALALGGNQLSGEIPASFGNLSELFELSLSRNMLEGKIPSIFGNSKFLQHLDLSENKISGAIPLQVFSLSSLSTLLDLSHNSLYGSLPTEVGTLKNLFTLDISENYLSGEIPGTIGKCLGMEKLNLQGNLFSGTMPPSLSSLKGLKHLDLSRNKLSGSIPTGLQNISVLEYLNVSSNLLDGVVPTEGVFRNANAIFVAGNKLCGGISKLHLPPCPNKVVTQSKHHKLKLIVILISVVACLLLSSFLAIYWRRNRSIKSSSTSSTIDQLSRVSYQSLHNGTEGFSTNNLIGSGSFGSVYKGRLQSEDKLVAIKVLNLQKKGAHKSFISECDALKIIRHRNLVKILTCCSSIDYKGQEFKALVFEYMSNGSLENWLHPGTESADQPQTLDLSQRLNILVDIASALHYLHSECEQPIVHCDLKPRNVLLNDDMVAHVSDFGLARLLSTLNGSSQKQSSTIGIKGTIGYAPPEYGVSSEVSTQGDVYSFGILILEMLTGKRPTEEMFKDGHNLHSYVKTAYPSNLLEIVDLVVLPKQIKQTATVASVEINMEQLSLVHPKEEKSIFSLFSIGLACSVESPKERLNMMDVTRELNLIRNGFRFG 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1603 1023 ProSitePatterns Protein kinases ATP-binding region signature. 713 736 IPR017441 GO:0005524
Glsi06g1603 1023 PANTHER OS04G0122200 PROTEIN 221 1011 - -
Glsi06g1603 1023 Pfam Leucine Rich repeat 469 484 IPR001611 GO:0005515
Glsi06g1603 1023 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 36 145 - -
Glsi06g1603 1023 Gene3D Transferase(Phosphotransferase) domain 1 789 1020 - -
Glsi06g1603 1023 SMART LRR_typ_2 445 468 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 101 125 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 493 518 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 173 197 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 221 244 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 245 270 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 566 589 IPR003591 -
Glsi06g1603 1023 SMART LRR_typ_2 590 615 IPR003591 -
Glsi06g1603 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Glsi06g1603 1023 SUPERFAMILY L domain-like 374 631 - -
Glsi06g1603 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 788 - -
Glsi06g1603 1023 PRINTS Leucine-rich repeat signature 566 579 - -
Glsi06g1603 1023 PRINTS Leucine-rich repeat signature 472 485 - -
Glsi06g1603 1023 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Glsi06g1603 1023 Gene3D Phosphorylase Kinase; domain 1 678 788 - -
Glsi06g1603 1023 Gene3D Ribonuclease Inhibitor 337 646 IPR032675 -
Glsi06g1603 1023 Gene3D Ribonuclease Inhibitor 37 147 IPR032675 -
Glsi06g1603 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 789 1022 - -
Glsi06g1603 1023 FunFam Leucine-rich repeat receptor protein kinase EMS1 146 240 - -
Glsi06g1603 1023 ProSiteProfiles Protein kinase domain profile. 707 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1603 1023 Pfam Leucine rich repeat 546 603 IPR001611 GO:0005515
Glsi06g1603 1023 SUPERFAMILY L domain-like 34 330 - -
Glsi06g1603 1023 SUPERFAMILY Protein kinase-like (PK-like) 679 1013 IPR011009 -
Glsi06g1603 1023 Pfam Protein tyrosine and serine/threonine kinase 710 939 IPR001245 GO:0004672|GO:0006468
Glsi06g1603 1023 Pfam Leucine Rich Repeat 175 197 IPR001611 GO:0005515
Glsi06g1603 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 644 - -
Glsi06g1603 1023 Gene3D Ribonuclease Inhibitor 148 226 IPR032675 -
Glsi06g1603 1023 SMART serkin_6 707 1016 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1603 1023 Gene3D Ribonuclease Inhibitor 230 336 IPR032675 -
Glsi06g1603 1023 SMART LRR_sd22_2 221 247 - -
Glsi06g1603 1023 SMART LRR_sd22_2 469 490 - -
Glsi06g1603 1023 SMART LRR_sd22_2 348 374 - -
Glsi06g1603 1023 SMART LRR_sd22_2 566 592 - -
Glsi06g1603 1023 SMART LRR_sd22_2 173 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1603 Glsi-ChrGlsi06 61757266 61760816 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1603 34 1020 Receptor kinase-like Gene Family AT3G47570 47.200 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1603 PK_Tyr_Ser-Thr 2.4e-43 CL0016