Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1600 ATGACAGGGGAGATTCCTATCAACTTGACAGGTTGCTCTGAACTCAGGCAGTTAAATTTGTCAATCAATAGTTTTACTGGCAAAATACCATCTGAGCTTGGCTCTCTTAGGAAGCTTGAAATGTTGTACCTTACTACAAACAATTTAACTGGAGAAATCCCACCTTCCATATGGAATCTTTCTTCCCTTGATGTTCTTTCCATTGATAATCAGCTGAATGACACTCACCTTCCAGACAACATGTTCTCCACCCTCTTTAATTTGCAATATTTTGGTATAGTTGAGAATCAGATTTCAGGTTCAATCCCAACTTCCATCACAAATGCATCTTCTCTTAAGTTATTTGATATTGGTACAAATTATTTTGTTGGAAAAGTTCCAAATCTAGGAAACCTACAGGATCTTCGGTGGCTAAATCTGGGCACTAATAATCTGGGCAGCAGTTCAAATGATGACTTGGATTTTATAACATCTCTGGAAAACTGTAGCAAACTGGAAACTTTGATGTTGTCTGTCAACAAACTTGGAGGTCTTTTACCCAGCTCTATAGGCAACTTGTCGACCCGACTCATTCAACTTTACTTTGGTGAAAATCAGATACACAGAACTATTCCTGCAACCTTAGGAAGTTCGTACACAAATTTAATTGCCTTGGTTATTGAACTAAACCAGTTTACAGGCACAATTCCAGACTTATTTGGGAATTTGCAAAAGATGCAAATACTGGGCTTAGGGGGAAACCAACTCTCAGGAGAGATACCAGCCTCCTTAAGCAACCTCAGCCAACTGGTTGAACTAAGCCTTTCAGGGAATATGCTTGAAGGAAAAAATCCAGCCATTGTTGGAAATTGGAAAATTTTGGAGCTTCTAGACCTCTCAGAAAACAAAATTAGTGGAGCTATTCCCTTTCAGGTTTTTAGTCTTTCCTCCTTGTCCACCTTACTGAACTTATCTCACAACCCATTGAATGGCTATCTGCCAACTGATGTGGGAACCCTTAAAAACCTTGTTACCTTGGATATCTCTGAAAACTATCTTTCTGGGGAGATTCCTGGGACCATTGGAGAGTGCTTAGGTATGGAAAACCTTAACTTACAGGGAAATTTGTTCAGTGGGACCATGCCTCCTTCACTATCTTCATTGAAAGGCCTTAAGCATTTAGATCTATCACGAAACAAATTGTCTGGATCAATTCCAACAGGTTTACAGAACATTTCTGTCCTTGAATACTTGAATGTTTCTTCTAATTTGTTGGATGGTGAGGTACCAACAGAAGGGGTTTTCAGAAATGCAAATGCAATATTTGTGGCAGCAAGACTTCTCTCCACCCTTAATGGCAGCTCTCAGAAGCAAAGCAGCACAATTGGAATAAAAGGGACTATTGGCTATGCTCCTCCGGAGTATGGAGTGGGTTCTGAGGTATCAACACAGGGTGACGTATATTCTTTTGGGATTCTAATTTTGGAAATGCTAACTGGAAAAAGACCCACGGAAGAAATGTTCAAAGATGGTCACAATCTCCATAGCTATGTGAAAACTGCATATCCAAGTAACTTTTTGGAGATTGTGGACTTAGCCGTTCTACCAAAACAAATAAAACAGACAGCAACAGCAGCATCAGTAGAAATCAACATGGAGAAGCCGAGCCTTGTGCATCCTAATGAAGAGAAGTCTATATTTTCACTATTTAGCATTGGACTTGCTTGTTCAGTAGATTCACCAAAAGAAAGATTGAAAATGATGGATGTCACAAGGGAGCTAAATCTGATTAGAAATGGTTTTCGTTTTGGCTAA 1794 0.3946 MTGEIPINLTGCSELRQLNLSINSFTGKIPSELGSLRKLEMLYLTTNNLTGEIPPSIWNLSSLDVLSIDNQLNDTHLPDNMFSTLFNLQYFGIVENQISGSIPTSITNASSLKLFDIGTNYFVGKVPNLGNLQDLRWLNLGTNNLGSSSNDDLDFITSLENCSKLETLMLSVNKLGGLLPSSIGNLSTRLIQLYFGENQIHRTIPATLGSSYTNLIALVIELNQFTGTIPDLFGNLQKMQILGLGGNQLSGEIPASLSNLSQLVELSLSGNMLEGKNPAIVGNWKILELLDLSENKISGAIPFQVFSLSSLSTLLNLSHNPLNGYLPTDVGTLKNLVTLDISENYLSGEIPGTIGECLGMENLNLQGNLFSGTMPPSLSSLKGLKHLDLSRNKLSGSIPTGLQNISVLEYLNVSSNLLDGEVPTEGVFRNANAIFVAARLLSTLNGSSQKQSSTIGIKGTIGYAPPEYGVGSEVSTQGDVYSFGILILEMLTGKRPTEEMFKDGHNLHSYVKTAYPSNFLEIVDLAVLPKQIKQTATAASVEINMEKPSLVHPNEEKSIFSLFSIGLACSVDSPKERLKMMDVTRELNLIRNGFRFG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1600 597 FunFam LRR receptor-like serine/threonine-protein kinase EFR 151 446 - -
Glsi06g1600 597 SUPERFAMILY L domain-like 188 430 - -
Glsi06g1600 597 Gene3D Ribonuclease Inhibitor 1 150 IPR032675 -
Glsi06g1600 597 Gene3D Ribonuclease Inhibitor 151 436 IPR032675 -
Glsi06g1600 597 PANTHER OS04G0122200 PROTEIN 443 585 - -
Glsi06g1600 597 SMART LRR_sd22_2 381 407 - -
Glsi06g1600 597 SMART LRR_sd22_2 260 278 - -
Glsi06g1600 597 SMART LRR_sd22_2 36 62 - -
Glsi06g1600 597 SMART LRR_sd22_2 162 188 - -
Glsi06g1600 597 SUPERFAMILY Protein kinase-like (PK-like) 452 591 IPR011009 -
Glsi06g1600 597 PRINTS Leucine-rich repeat signature 381 394 - -
Glsi06g1600 597 PRINTS Leucine-rich repeat signature 287 300 - -
Glsi06g1600 597 SUPERFAMILY RNI-like 2 274 - -
Glsi06g1600 597 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 75 - -
Glsi06g1600 597 Pfam Protein tyrosine and serine/threonine kinase 449 514 IPR001245 GO:0004672|GO:0006468
Glsi06g1600 597 SMART LRR_typ_2 381 404 IPR003591 -
Glsi06g1600 597 SMART LRR_typ_2 260 283 IPR003591 -
Glsi06g1600 597 SMART LRR_typ_2 132 155 IPR003591 -
Glsi06g1600 597 SMART LRR_typ_2 36 60 IPR003591 -
Glsi06g1600 597 SMART LRR_typ_2 405 430 IPR003591 -
Glsi06g1600 597 SMART LRR_typ_2 333 357 IPR003591 -
Glsi06g1600 597 Gene3D Transferase(Phosphotransferase) domain 1 437 593 - -
Glsi06g1600 597 Pfam Leucine rich repeat 214 273 IPR001611 GO:0005515
Glsi06g1600 597 Pfam Leucine rich repeat 361 418 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1600 Glsi-ChrGlsi06 61699152 61702283 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1600 435 594 Receptor kinase-like Gene Family AT3G47570 43.478 4.44e-27 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1600 PK_Tyr_Ser-Thr 3.4e-06 CL0016