Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1597 ATGTCATTTCCATTTTGGTCCAAACACCTTCAAGCCATACTTATCTTCTATGTAAACTTGCTTTGGCTGCCACCTACCAGAGCTGCATCTGCATTAGAAAACGAGACTGATTATTTGGCATTGCTCAAGTTTAAAGAATCAATATCCAATGACCCATATGAAATCTTGAGCTCTTGGAATAGTTCAAACCACTTCTGCAGCTGGCATGGAATCACATGCAGCCGCCAGCATCAAAGAGTGACTCAGTTGAAGTTGCAAGGGTATCGATTGCGTGGGATCATATCACCCCATGTTGGCAACCTCTCCTTCCTGAGAAACCTCTACCTTCAGAACAACAGCTTCCATGGAGAAATCCCACCAGAGTTGGGTCGTTTGTTCAGACTGCAACAACTCTCTCTGACGGATAACACAATGACAGGGGAGATTCCTATCAACTTGACAGGTTGCTCTGAACTCAGGCAGTTAAATTTGTCAATCAATAGTTTTACTGGCAAAATACCATCTGAGCTTGGCTCTCTTAGGAAGCTTGAAATGTTGTACCTTACTACAAACAATTTAACTGGAGAAATCCCACCTTCCATATGGAATCTTTCTTCCCTTGATGTTCTTTCCATTGGTTATAACAACTTGGAGGGGAGAATACCAGAAGAAATACACCTTCTGAAGAACTTGAGAATTTTAGCAATATCTGGGAACAAATTGTCTGGCAAGCTTCCTTCTTCACTTTACAATATGTCGTCCTTCACTTTCTTATCATTAGCAGATAATCAGCTGAATGACACTCACCTTCCAGACAGCATGTTCTCCACCCTCTTTAATTTGCAATATTTTGGAATAGGTGAGAATAAGATTTCAGGTTCAATCCCAACTTCCATCACAAATGCATCTTCTCTTAAATTATTTGATATTGGTATAAATTATTTTGTTGGAAAAGTTCCAAATCTAGGAAACCTTCAAGATCTTCGGTGGCTAAATCTGAACTTTAATAATCTGGGCAGCAGTTCAAATGATGACTTGGATTTTATAACATCTCTGGATAACTGCAGCAAACTGGAAAAGTTGATACTGTCTGACAACGAACTTGGAGGTCTTTTACCCAGCTCTATAGGCAATTTATCAACCCGACTCACTGAACTATACCTTGGTCATAATCAGATATATGGATCTATTCCGGCAACTTTAGGAAGGTACACAAATTTAATTGCCTTGGTTATTGAACAAAACCAGTTTACAGGCACAATTCCAGACTTTTTTGGGAAGTTTCAAAAGATGCAAATACTGGGCTTAGGGGGAAACCAACTCTCAGGAGAGATACCGGCATCCTTAAGCAACCTCAGCCAACTGGTTGAACTAAGCCTTTCAGGGAATATGCTTGAAGGAAAAATTCCAGCCATTGTTGGAAATTGGAAAATTTTGGAGCTTCTAGACCTTTCAGAAAACAAAATTAGCGGAGCTATTCCCTTGCAGGTTTTTAGTCTTTCCTCCTTGTCCACCTTACTGAACTTATCTCACAACTCATTGAACGGCTCTCTGCCTACCGATGTGGGAACCCTTAAAAACCTTGTCAACTTGGATATCTCTGAAAACTATCTTTCTAGGGAGATTCCTGGGACCATTGGAGAGTGCTTAGGTATGGAAAACCTTAACTTACAGGGGAATTTGTTCAGTGGAACCATGCCTCCATCACTAGCTTCATTGAAAGGCCTTAAACATTTAGATCTATCACGAAACAAATTGTCTGGATCAATTCCAACAGGTTTACAGAACATTTCTGTCCTTGAATACTTGAATGTTTCTTATAATTTGTTGGATGGTGAGGTACCAACAGAAGGGGTTTTCAGAAATGCAAATGCAATATTTGTGGCAGGTAATAAACTTTGTGGGGGTATCTCCAAGCTGCATCTCCCACCATGCCCTAACAAAGTTGTGATACAAAGTAAACGCCATAAATTGAAGCTCATAGTAATTCTAATTTCTGTGGTTGCTTGTCTTCTGTTGTCATCTTTTCTTGCTATCTATTGGAGGAGGAACAGAAGTATAAAATCATCTTCCACTTCATCAACAATTGACCAGCTTTCTAGGGTGTCATACCAGAGCCTACACACTGGAACAGAAGGATTCTCAACCAACAATTTGATAGGATCTGGGAGTTTTGGCTCTGTGTATAAAGGGAGACTTCTTTCCACCCTTAATGGTAGCTCTCAGAAGCAAACCAGCATAATGGGAATAAAAGGGACTATCGGCTATGCTCCTCCAGAGTATGGAATAGGTTCTGAGGTGTCGACACAGGGTGATGTATATTCTTTTGGGATTCTGGTTTTGGAAATGTTAATTGGAAAAAGACCTACAGAAGAAATGTTCAAAGATGGTCACAATCTCCGTAGCTATGTGAAAACTGCATATCCAAGTAACCTTTTGGAGATTGTGGAATTAGCCGATCTACCAAAACAAATAAAACAGACAGCAACAGCAGCATCAGGAGAAATCAACATGGAGAAGCCGAGCCTTGTGCATCCTAATGTAGAGAAGTCTATATTTTCACTATTTAGCATTGGACTTGCTTGCTCAGTAGAGTCACCAAAAGAAAGATTGAATATGATGGATGTCACAAGGGAGCTAAATCTGATTAGAAATGGTTTTCGTTTTGGAGAAACAAAAGGAAATTGA 2667 0.3993 MSFPFWSKHLQAILIFYVNLLWLPPTRAASALENETDYLALLKFKESISNDPYEILSSWNSSNHFCSWHGITCSRQHQRVTQLKLQGYRLRGIISPHVGNLSFLRNLYLQNNSFHGEIPPELGRLFRLQQLSLTDNTMTGEIPINLTGCSELRQLNLSINSFTGKIPSELGSLRKLEMLYLTTNNLTGEIPPSIWNLSSLDVLSIGYNNLEGRIPEEIHLLKNLRILAISGNKLSGKLPSSLYNMSSFTFLSLADNQLNDTHLPDSMFSTLFNLQYFGIGENKISGSIPTSITNASSLKLFDIGINYFVGKVPNLGNLQDLRWLNLNFNNLGSSSNDDLDFITSLDNCSKLEKLILSDNELGGLLPSSIGNLSTRLTELYLGHNQIYGSIPATLGRYTNLIALVIEQNQFTGTIPDFFGKFQKMQILGLGGNQLSGEIPASLSNLSQLVELSLSGNMLEGKIPAIVGNWKILELLDLSENKISGAIPLQVFSLSSLSTLLNLSHNSLNGSLPTDVGTLKNLVNLDISENYLSREIPGTIGECLGMENLNLQGNLFSGTMPPSLASLKGLKHLDLSRNKLSGSIPTGLQNISVLEYLNVSYNLLDGEVPTEGVFRNANAIFVAGNKLCGGISKLHLPPCPNKVVIQSKRHKLKLIVILISVVACLLLSSFLAIYWRRNRSIKSSSTSSTIDQLSRVSYQSLHTGTEGFSTNNLIGSGSFGSVYKGRLLSTLNGSSQKQTSIMGIKGTIGYAPPEYGIGSEVSTQGDVYSFGILVLEMLIGKRPTEEMFKDGHNLRSYVKTAYPSNLLEIVELADLPKQIKQTATAASGEINMEKPSLVHPNVEKSIFSLFSIGLACSVESPKERLNMMDVTRELNLIRNGFRFGETKGN 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1597 888 SMART LRR_sd22_2 348 374 - -
Glsi06g1597 888 SMART LRR_sd22_2 221 247 - -
Glsi06g1597 888 SMART LRR_sd22_2 173 199 - -
Glsi06g1597 888 SMART LRR_sd22_2 421 447 - -
Glsi06g1597 888 SMART LRR_sd22_2 518 537 - -
Glsi06g1597 888 SMART LRR_sd22_2 566 592 - -
Glsi06g1597 888 SMART LRR_typ_2 173 197 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 318 341 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 445 469 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 221 244 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 590 615 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 566 589 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 518 542 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 374 397 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 245 270 IPR003591 -
Glsi06g1597 888 SMART LRR_typ_2 101 125 IPR003591 -
Glsi06g1597 888 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Glsi06g1597 888 SUPERFAMILY Protein kinase-like (PK-like) 739 877 IPR011009 -
Glsi06g1597 888 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Glsi06g1597 888 SUPERFAMILY L domain-like 34 331 - -
Glsi06g1597 888 Gene3D Transferase(Phosphotransferase) domain 1 718 882 - -
Glsi06g1597 888 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 73 340 - -
Glsi06g1597 888 SUPERFAMILY Protein kinase-like (PK-like) 675 731 IPR011009 -
Glsi06g1597 888 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Glsi06g1597 888 Pfam Leucine rich repeat 546 603 IPR001611 GO:0005515
Glsi06g1597 888 Pfam Leucine rich repeat 399 458 IPR001611 GO:0005515
Glsi06g1597 888 FunFam LRR receptor-like serine/threonine-protein kinase EFR 341 643 - -
Glsi06g1597 888 SUPERFAMILY L domain-like 374 631 - -
Glsi06g1597 888 Gene3D Ribonuclease Inhibitor 199 337 IPR032675 -
Glsi06g1597 888 PRINTS Leucine-rich repeat signature 566 579 - -
Glsi06g1597 888 PRINTS Leucine-rich repeat signature 472 485 - -
Glsi06g1597 888 PANTHER UNNAMED PRODUCT 21 541 - -
Glsi06g1597 888 Gene3D Ribonuclease Inhibitor 338 640 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1597 Glsi-ChrGlsi06 61619216 61622797 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1597 737 880 Receptor kinase-like Gene Family AT3G47570 43.056 3.02e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Glsi06g1597 LRR_8 2e-07 CL0022