Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1553 ATGGACTTCAAGGACTATAAAAAGGCATTTGGAAGACTTGAGAGAGAGAGCACCCAACTCGAAACTGGGGAAAGCGGAGGAAAGCGTCTACGCGAACAGTGCTGCGTAGGGACATCGAGGGCCACCAACCGAGGACGCCGGAGCAGAGGCCAAACACGCCGTGAAACAAAGAGGAAGAAGTCCCGTTCAGTTTGGGCTCGATACACACAGGGAGACGTAGAAATGAGTTCTTGGGCTCCAGCTTCTTTTCTTACTTATCAACTTATATCATTTTCTGCTGCTATTACCAAATCTTCTATCAATACAAAATGCTGCTCCAGTTTCAGATGTAAAAGTCCAAGCAGAGGAAGAAGATTTTGTCACTCTGTTGTTGAGGACTGTTATAAAATCAGGAAACTCAAGATTACTGGTGTAATTAAATCTAGCCGAGGAATATCAAATTTGCAGACCCAACGAGGGACTTGGGAGGAACCTGATGATGGCAGTGGTAGTGAGTATGATGATGAAGATGAAGATGAGCAAATGGAGGATGAGAACTTTGGCTTTGAAAGTGATTGGGAAGAGGAAGAGACTCAGACACCAACTTCAGCTACTAATGATGTTATTTCAGGGAACAAGTGTGGGGAGGATATTAAGAGAGAGGTTGAACAGCTTTTGGAGCCAGAAGAAAGGGCAGTCTTGCAACAAAATGTAACTCCTAACTTGGGAAAAATATCAACTGTAAAGTGGAGCCCACTGCACACTTTAGCGCTATCAATGCAGATAAGTTGCATGGATAACCTGCTTGAAAATGGTCTTGATATTGATTATCTTGATAAGGAAGGTCTCACTGCACTTCATAAAGCTATTATAGGAAAAAAAGAGGCTGTTATAAGCCATCTTTTACGAAAAGGTGCAAGTCCTCATGTCAAAGATAAGGATGGTGCTACACCACTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTAAAGTTATTGATCAAATATAAGGTTGACGTCAACATTGCAGATAATGAAGGTTGGACTCCATTGCACATTGCCATTCAAAGCAGAAACAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGTAGATAAGACAAGAAGAAATAAGGATGGGAAAACAGCACTGGATCTGAGTTTATGTTATGGGAAGGACTTCAAATCTTATGACCTTGCCAAATTACTGAAGGTAGTTCCAGCTAACTGA 1212 0.4158 MDFKDYKKAFGRLERESTQLETGESGGKRLREQCCVGTSRATNRGRRSRGQTRRETKRKKSRSVWARYTQGDVEMSSWAPASFLTYQLISFSAAITKSSINTKCCSSFRCKSPSRGRRFCHSVVEDCYKIRKLKITGVIKSSRGISNLQTQRGTWEEPDDGSGSEYDDEDEDEQMEDENFGFESDWEEEETQTPTSATNDVISGNKCGEDIKREVEQLLEPEERAVLQQNVTPNLGKISTVKWSPLHTLALSMQISCMDNLLENGLDIDYLDKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNIADNEGWTPLHIAIQSRNRDIAKILLVNGVDKTRRNKDGKTALDLSLCYGKDFKSYDLAKLLKVVPAN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1553 403 SMART ANK_2a 241 270 IPR002110 GO:0005515
Glsi06g1553 403 SMART ANK_2a 307 336 IPR002110 GO:0005515
Glsi06g1553 403 SMART ANK_2a 340 369 IPR002110 GO:0005515
Glsi06g1553 403 SMART ANK_2a 274 303 IPR002110 GO:0005515
Glsi06g1553 403 MobiDBLite consensus disorder prediction 160 190 - -
Glsi06g1553 403 SUPERFAMILY Ankyrin repeat 234 385 IPR036770 -
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat profile. 274 306 IPR002110 GO:0005515
Glsi06g1553 403 Gene3D - 205 311 IPR036770 -
Glsi06g1553 403 Pfam Ankyrin repeats (3 copies) 289 371 IPR002110 GO:0005515
Glsi06g1553 403 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 214 398 - -
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515
Glsi06g1553 403 Gene3D - 312 398 IPR036770 -
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat region circular profile. 274 306 - -
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat profile. 340 372 IPR002110 GO:0005515
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat region circular profile. 340 366 - -
Glsi06g1553 403 ProSiteProfiles Ankyrin repeat region circular profile. 307 339 - -
Glsi06g1553 403 MobiDBLite consensus disorder prediction 149 205 - -
Glsi06g1553 403 MobiDBLite consensus disorder prediction 46 61 - -
Glsi06g1553 403 MobiDBLite consensus disorder prediction 40 61 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1553 257 366 Ion Channels AT2G25600 29.078 5.60e-08 53.1