Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1545 ATGGGTATTTCCAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGTCAGCCTGCAAACACTAAGCTATCAAGTAACAAGACAGTCAGGAGAATTCGTGTTAGAGGTGGCAATGTGAAGTGGAGGGCATTGAGATTGGATACTGGAAATTACTCATGGGGTAGTGAAGCTGTAACTCGCAAGACTCGTGTATTAGATGTGGTGTACAATGCCTCAAACAATGAACTTGTACGAACTCAAACCCTTGTCAAGAGTGCTATTGTTCAGGTTGATGCTGCACCATTTAAGCAGTGGTACCTTCAGCACTATGGTGTTGATATTGGTAGGAAAAAGAAAGCAGCTGCTAAGAAGGACTCCACAGAGGAGGGTGAAGCTCCTGCAGCAGAAGAAACAAAGAAAAGTAAGCATGTGCTGAGAAAACTGGAGAAGCGCCAGAAGGATCGTAAGCTTGATTCTCACATAGAAGAGCAGTTTGGCGGAGGCAGATTGTTGGCTTGCATTTCTTCTCGCCCTGGCCAATGTGGCAGAGCTGATGGGTACATTTTGGAAGGTAAGGAACTAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTTGA 663 0.4646 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKAAAKKDSTEEGEAPAAEETKKSKHVLRKLEKRQKDRKLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1545 220 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Glsi06g1545 220 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Glsi06g1545 220 Gene3D - 25 213 - -
Glsi06g1545 220 FunFam 40S ribosomal protein S8 32 161 - -
Glsi06g1545 220 FunFam 40S ribosomal protein S8 162 215 - -
Glsi06g1545 220 MobiDBLite consensus disorder prediction 130 151 - -
Glsi06g1545 220 MobiDBLite consensus disorder prediction 11 26 - -
Glsi06g1545 220 CDD Ribosomal_S8e_like 5 197 - -
Glsi06g1545 220 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Glsi06g1545 220 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Glsi06g1545 220 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Glsi06g1545 220 FunFam 40S ribosomal protein S8 109 176 - -
Glsi06g1545 220 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1545 Glsi-ChrGlsi06 60126269 60128348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1545 1 220 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.000 7.51e-129 360