Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1541 ATGGAAAACGATTTCTTCCTAAATGCAGGAGTTTCCCCAGCTCTGCACTTTGAGCCTTCATCTTCTTCAATGCCCACTTGGCAATCACTATCGTCCGCCATGGATATTCAAGCTACAGTTCTGAATTGTTCATCTGAGCAAACCCAAGATTGCTTTTACAACCCCAGATGGGAAAAGTCAACGGATCATGGCCTTCAATTTGATTCTGCTCTGAGTTCGATGGTTTCTTCCCCTGCAGCTTCCAATTCTAATTTGTCCAATGAGAATTTCGTTATCAGGGAATTGATCGGAAAATTGGGAAACATTGGTAGCTCCAGCGACATCTCTCCGCATTCTCAGCCTTTGGTTGGGCCATCATCTTCTTACATGAACGGCAATAACAGCACAAACACTTCATGTTATAGCACTCCTTTGAGCTCTCCACCTAAGCTGAACATTCCCCCATTAATGAATCACTTGGTGAAAGAGAACTTACCCAGTTTGCCAAAATCAATGGCTTTGAATTCCAGTGTGGCAGAGTTCTCCGCTGATCCTGGGTTTGCGGAGAGAGCTGCCAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGAAGAAGCCAAATTGGACCGAACAATGCTGAATTCACTCAGAGATCTACTCCATTAATTGAAACTGGGAAGGTCCCTCGAGTCTCAAGTAGCCCATCTCTGAAAGCACTTGGATCTCAAATGGGTATCCAGGAAAATAAAAATTCTCCATTGCAGGACCGAATGGAAGTGGCCAATTCTCAAGAGGAATCCACGATATCTGAGCAAAACCCAAATGGGGAAACTGGGATGAAACCTTCCCCTGATACGAATTCCAGAAAGAGAAAAGCTTGTTCCAGAGGAAAAGTCAAAGAAACTTCAACCTCTATCAATCCTCCCAAGGCTGCTCAAGCTAGTGGAGATTCAAATGCAAAGGGCAGCAAGCCAAATGAGGGTGAAGGACATGTAAACGGCCCTGTAAAGGCAGAGGAACAGTCAAAAGGAGGCACCGGTAATGCAGGAGGGGATGAGAAACAGAGCAAGAGCAACAACTCAAAACCTTCTGAGCCTCCAAAGGACTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAGCTTCTGCAAGATCTTGTACCAGGCTGCAATAAGGTCACTGGTAAAGCTCTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTGTCTATGAAATTGTCTTCTGTGAACACCAGGATTGATTTGAGTATTGACAATTTAATCTCAAAAGATATATTTCAATCAAATAACTCTTCGGCGCACCCAATATTCCCCTTAGATTCCTCGGCGCCGTCCTTTTACGGGCACCAGCCCCAGCAAAACCCAGAACTCCACAACAACATCGCTAGTGGAACTTTGACCCACTGCTCAGTGGATTCTTTAGATACTGCTCTGTGCCAAAGCCTTGGTATGCAGTTACCTCCCCTAAATGGATTTCATGAAGGTGGCTCTCAGTATCCAATAACTTTCTGTGAGGATGACCTCCACGCTATTGTTCAGATGGGAATTGGCCAAACTGAAAATAGGAAAACACCAACACAGTCCCAGAACTTCAATGGCTCAAATCAAGTACCCCATATGAAAGTTGAGCTCTGA 1719 0.4433 MENDFFLNAGVSPALHFEPSSSSMPTWQSLSSAMDIQATVLNCSSEQTQDCFYNPRWEKSTDHGLQFDSALSSMVSSPAASNSNLSNENFVIRELIGKLGNIGSSSDISPHSQPLVGPSSSYMNGNNSTNTSCYSTPLSSPPKLNIPPLMNHLVKENLPSLPKSMALNSSVAEFSADPGFAERAAKFSCFGSRSFNGRRSQIGPNNAEFTQRSTPLIETGKVPRVSSSPSLKALGSQMGIQENKNSPLQDRMEVANSQEESTISEQNPNGETGMKPSPDTNSRKRKACSRGKVKETSTSINPPKAAQASGDSNAKGSKPNEGEGHVNGPVKAEEQSKGGTGNAGGDEKQSKSNNSKPSEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRIDLSIDNLISKDIFQSNNSSAHPIFPLDSSAPSFYGHQPQQNPELHNNIASGTLTHCSVDSLDTALCQSLGMQLPPLNGFHEGGSQYPITFCEDDLHAIVQMGIGQTENRKTPTQSQNFNGSNQVPHMKVEL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1541 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 441 IPR036638 GO:0046983
Glsi06g1541 572 MobiDBLite consensus disorder prediction 293 316 - -
Glsi06g1541 572 CDD bHLH_AtBPE_like 363 448 - -
Glsi06g1541 572 MobiDBLite consensus disorder prediction 548 565 - -
Glsi06g1541 572 SMART finulus 379 429 IPR011598 GO:0046983
Glsi06g1541 572 Gene3D - 370 445 IPR036638 GO:0046983
Glsi06g1541 572 MobiDBLite consensus disorder prediction 548 572 - -
Glsi06g1541 572 FunFam Basic helix-loop-helix transcription factor 370 442 - -
Glsi06g1541 572 Pfam Helix-loop-helix DNA-binding domain 377 424 IPR011598 GO:0046983
Glsi06g1541 572 MobiDBLite consensus disorder prediction 342 359 - -
Glsi06g1541 572 MobiDBLite consensus disorder prediction 195 363 - -
Glsi06g1541 572 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 260 483 IPR024097 GO:0006355
Glsi06g1541 572 MobiDBLite consensus disorder prediction 195 277 - -
Glsi06g1541 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 423 IPR011598 GO:0046983
Glsi06g1541 572 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1541 Glsi-ChrGlsi06 60026953 60029442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1541 1 526 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.052 1.44e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g1541 HLH 4.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1541 06 60026953 60029442 Glsi07g1622 07 52963506 52965959 CCT