Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1529 ATGGCGAAGCCTGGGGTGGCGGAATCCGATCCAGCGGTGGCGGCGAAGGTGTTAGAGTTGAAGAAGGAGTTGACGAGATTGGTTAAGTCTATTGACGACGATGAGGATTGCAGCGCCCAAACCATTGATCAAGCTAAGGAAGCTCTGTGCGTGCTGAAGGATTTGAAACTGCGAAAGAGATCACCATCGTCATCACCATCGCCATCACCTTCATCTTCACTATCTTTGAAGCTGCACAAAACTCCCACTTGCCCAGAAGAATTTAAGTGCCCTCTTTCCAAGGAATTGATGAAAGATCCTGTCATTGTGGCATCTGGAAAGACGTACGATAGACCCTTCATTCAAAAATGGCTGAAAGCTGGGAATCGAACTTGCCCTCAAACCGAAGTAGTCCTCTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAAATCATAGAACAATGGTGCAAAAACCACGGGGTTGAATTGCCCAAACCAGTTCACTATATTTACAATGAAGGCATAGCAGAAGCTGATCGTGATCATTTTCTTTCTCTGCTTGAGAAAATGTCTTCATCACTTTCTGAACAGAAAGCAGCTGCAAAACAACTCAGGTTGTTGACAAAGAAGATGCCTTCCTTCAGGGCATTCTTTGGTGAGACAGCAGAAGCCATTTCTGAGCTGCTCAAACCAATCTCCGGAAATGACTGTTTCAGTAACATTCACCCTGATCTCCAAGAAGATCTGATCACAACACTTCTGAATATTTCAATCCATGATAGCAACAAGAAACTTGTAGCAGAAACTCCAATGGTGATTCCACTCCTCATGAAAGCCTTGAGATCAGGAACAACAGAAACAAGAAGCAATGCTGCAGCAACCCTTTTCACTTTGTCAGCTCTTGACTCAAACAAGGAGCTTATAGGGCAATCTGGTGCCTTAAAGCCACTTATTGACCTTTTAGAAGAAGGGCATCCCTTAGCTATGAAAGATGTTGCATCAGCAATCTTTACCTTGTGTGTCATTCATGAAAACAAGGCAAGAGCAGTGAGGGATGGTGCAGTGGGTGTGATTGTGAGGAAAATCTCAAGCCGGGTTCGTGTTGATGAATTGCTAGCTATCCTTGCACTGCTTTCAAGTCACCAGAAGGCTGTTCTGGACATGGCAGATCTTGGAGCTGTCCCTAGCTTGCTGAGCATTATGAGGGAGAGCACCTGCGAACGAAACAAGGAGAATTGCATAGCAATCCTTCAAACAATATGTCTGTATGATAGAACCAAGTTGAAGGAGATAAAGGAAGAGGAGAACAGCTATAGAACAATCTCTGAGCTTGCACAGAATGGAACTTCAAGGGCTAGGAGGAAGGCTAGTGGGATTCTTGAGAGACTGAACAGGGTTGTGAATAATATCACACACACTGCATAA 1410 0.4468 MAKPGVAESDPAVAAKVLELKKELTRLVKSIDDDEDCSAQTIDQAKEALCVLKDLKLRKRSPSSSPSPSPSSSLSLKLHKTPTCPEEFKCPLSKELMKDPVIVASGKTYDRPFIQKWLKAGNRTCPQTEVVLSHTVLTPNHLIREIIEQWCKNHGVELPKPVHYIYNEGIAEADRDHFLSLLEKMSSSLSEQKAAAKQLRLLTKKMPSFRAFFGETAEAISELLKPISGNDCFSNIHPDLQEDLITTLLNISIHDSNKKLVAETPMVIPLLMKALRSGTTETRSNAAATLFTLSALDSNKELIGQSGALKPLIDLLEEGHPLAMKDVASAIFTLCVIHENKARAVRDGAVGVIVRKISSRVRVDELLAILALLSSHQKAVLDMADLGAVPSLLSIMRESTCERNKENCIAILQTICLYDRTKLKEIKEEENSYRTISELAQNGTSRARRKASGILERLNRVVNNITHTA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1529 469 PANTHER U BOX DOMAIN-CONTAINING 38 458 - -
Glsi06g1529 469 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Glsi06g1529 469 FunFam RING-type E3 ubiquitin transferase 168 464 - -
Glsi06g1529 469 FunFam RING-type E3 ubiquitin transferase 83 157 - -
Glsi06g1529 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 157 IPR013083 -
Glsi06g1529 469 SMART arm_5 254 295 IPR000225 GO:0005515
Glsi06g1529 469 SMART arm_5 376 417 IPR000225 GO:0005515
Glsi06g1529 469 SMART arm_5 296 336 IPR000225 GO:0005515
Glsi06g1529 469 SUPERFAMILY ARM repeat 174 458 IPR016024 -
Glsi06g1529 469 Gene3D - 176 466 IPR011989 -
Glsi06g1529 469 SUPERFAMILY RING/U-box 83 161 - -
Glsi06g1529 469 MobiDBLite consensus disorder prediction 59 78 - -
Glsi06g1529 469 CDD RING-Ubox_PUB 85 137 IPR045210 -
Glsi06g1529 469 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Glsi06g1529 469 Pfam U-box domain 85 154 IPR003613 GO:0004842|GO:0016567
Glsi06g1529 469 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1529 Glsi-ChrGlsi06 59531273 59535550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1529 146 469 U-box Gene Family AT3G07360 61.398 1.15e-129 377