Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1528 ATGGGACCAAATGCAGGTTCTTTGTTAGCGGCGGCACAACAAGCGGAACAACTTAGAATAAACGGCAACACTTACTTCAAGAAAGATCGTTTTGGAGCTGCCATCGATGCTTATACCGAGGCAATTACACTGTGTCCCAATGTTACGGTTTATTGGACGAATCGTGCTCTGTGCCATCTCAAGCGAAATGACTGGACAAGAGTGGAGGAAGATTGTCGGAAAGCTATTCAGCTTAATAACTATTCAGTCAAGGCCCACTATATGTTGGGGCTCGCATTGCTGCAGAGACAAGAATATGCCAAGGGAATCAGAGAATTGGAGAAGGCTTTGGATCTTGGGAGGGGGGCTGATCCTAACGGCTATATGGTAGAAGAGATCTGGCAGGAGCTTGCAAAAGCAAGATACCAAGAGTGGGAACACTCATCTACCAAGCGATCGTGGGAATTACAGAGCTTGAAAGGAGCTTGTGAGACTGCTCTAAAGGAAAAGCATTTTCTTGACGTCTACCAAAAGGAAGGATTTTTAGATGAAGATTGTTCCCTGTCAGAACAACTAGAGGCTTTAGGAAGAGTATTCAGCAAGGCTGCGGAGGCTGACATGCCTACTGAGGTGCCGGATCACCTATGTTGTAGAATTACACTTGATATATTTCGCGATCCTGTTATTACACCAAGTGGACTTACATACGAGAGGGCAGTGATTCTTGACCATCTTCAGAAGGTGGGTAGGTTTGATCCAGTCACAAGAGAACCGCTATATCCATCCCAGCTAATCCCAAACCTGGCCATAAAGGAAGCGGTCCAGGAATTCTTGGACAAACATGGATGGGCCTACAAGATAGATTAA 846 0.4563 MGPNAGSLLAAAQQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVTVYWTNRALCHLKRNDWTRVEEDCRKAIQLNNYSVKAHYMLGLALLQRQEYAKGIRELEKALDLGRGADPNGYMVEEIWQELAKARYQEWEHSSTKRSWELQSLKGACETALKEKHFLDVYQKEGFLDEDCSLSEQLEALGRVFSKAAEADMPTEVPDHLCCRITLDIFRDPVITPSGLTYERAVILDHLQKVGRFDPVTREPLYPSQLIPNLAIKEAVQEFLDKHGWAYKID 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1528 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Glsi06g1528 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Glsi06g1528 281 Gene3D Tetratricopeptide repeat domain 10 145 IPR011990 GO:0005515
Glsi06g1528 281 SMART tpr_5 49 82 IPR019734 GO:0005515
Glsi06g1528 281 SMART tpr_5 15 48 IPR019734 GO:0005515
Glsi06g1528 281 SMART tpr_5 83 116 IPR019734 GO:0005515
Glsi06g1528 281 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Glsi06g1528 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Glsi06g1528 281 ProSiteProfiles TPR repeat profile. 83 116 IPR019734 GO:0005515
Glsi06g1528 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 109 - -
Glsi06g1528 281 SUPERFAMILY TPR-like 14 135 IPR011990 GO:0005515
Glsi06g1528 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 11 279 IPR045200 GO:0000209|GO:0061630
Glsi06g1528 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Glsi06g1528 281 Pfam Tetratricopeptide repeat 22 47 IPR019734 GO:0005515
Glsi06g1528 281 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Glsi06g1528 281 SUPERFAMILY RING/U-box 197 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1528 Glsi-ChrGlsi06 59513783 59527156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1528 11 280 U-box Gene Family AT3G07370 66.421 1.81e-135 382