Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1454 ATGTGTACCTTCTTCATATTCTTCCTGCTTTTTTCATTCTCACCCCAGCTACTAACCTCGAAACCCTTTGTTTCTTCCAGCCGCAGGGTCCTCCACCAACCCTTTGTGCCATTGGACAATGTCCCTCCATCTCAGCCTTCAAATCCTCCCCCTCCTTCACCTTCACCGCCAAACCCCAAACACCCAGTTTCTACGACTACCCCTGACCAGTCTCCTCCCTTTTTCCCCACATATCCTTCTCCTCCTCCTCCACCTTCCCCAGCTACCTTTGCTTCCTTCCCTGCCAACATCTCCTCTCTTGTTATACCTCAAACCCCCAAATCCAAATCCTCTTCTGGGAAGCTAGTCGGCGTTACTATTTCTGCCGTTGTCTGCGCCATTATTGTTGTCGGGGTTTCCGCCTTCGTCTATTGCCGGCGAAAGCGGAAGCGTTACTCTTTGGATGAGAAGATTCTCAGATCCGATAGTAGTCTTAGACTGTTCCCTGCCAATGCTGAAAACAGAAATGGGAGTCGCAAGGTGAGACACACCTCTTCCGCTATCTCTGAGTTTCTTTATCTGGGTACTGCTGTTGATTCACAGGGTGTCGATGATCGTCCTGATTCCCGTACCAATAATGGTGGTGCTGCTGCTTTGGACCCTCGCAAAATGGACTCGCCGGAGCTCCAACCGCTTCCACCGCTGTCCCGGCAAGCTGCGAGGCAGCAACATGAAGCTGGACGTTCTGATGGCGGTTCAACAACAGCAGACGAAGACGAAGAGGAGTTCTACTCGCCGAATAGGTCTTTGGGTGGTCGTGAGAGCTCTAGTGGTACTGGATCAGGTTCGCGAAGAGCATTTGCGGTCATTGCGGGTGAGAATTTTGGGGGACGAAGCAGCAAATCGAGTTCTAGTTCGTATTCATCTTCCACTTCAAGTTCACCGGACCGGTCACACTCGATTAGCCTATCGCCACCGATTAGCTCAAGTCCCAGAAGATCGCAACCGAAATCACCAGAAACTTCAGTGGTCCACAGCATTTCTTCGCCGCCAAACCCACTGGCACCACAAACTCAGAATGAAGCGCTCTTGGCTGGTGAAAGAAATTCCTTGTCCTCGTCTTCACTGTCATCGCCGCATAGAAACCAAGTTGCATCACCTGCGTTAGCCCCTGTTTACAACCAGTATGTGCAATCTTCTTCAATGTCATCGTCATCTTCAACCCCAGAGAGAGCTTTTGCTCAAGATGGCCAGTCTCCTTTGCTGTCTCCGCTATCATTATCGCCAAATAGAGCTTTGGAGACGAACCCAGATGGGGCAGTGGGAGCTTCAGATGTTTCATTTAGAACTAGGAAACCTTCTCCATCTCCTGTTTTTTCATCACCAGAGAGAAATGTGAAGAATTCTCACGCATCACCAATATTGTCTAATGCATTTTCAGAGGGAGTGGAGAAAAATGCATGTGCATCACCAAGATTATCCAATGCTTCAGATGGAAGTGGGAAGTCTCTGTCATCTGCTTTTTCTCTGCCATCGTCACCGGAAAAAGTGTTGGAGCAAAGTTTATATCAGTCCCCAAGAATTTCCAGCTTTTCAGATCGGTATAGGCAATCTCCTCTGTCATCACGGCCTTTGTCGCCGACCTTGCTTTCATCTCCGGAAATGGAATTAAACACAATTTCATCTCAGTTAGCAACTTTTGATAATATTTTCGGTCAAAATGAAGGATTCTCAGCTCCTTCTCTCCTATCGCAGCCGAAACACTGGGAAATTCCAGTTCTTTCAACACCCATTGTTCAGCCTCGTAGAGTTTCACCCCCTCCGCCTCCGCCTCTTCCTCCTCGTCCATCCCAACAGCATCGGAAACAATGGAAAATTCCAGCTCCTTCAACACCTATCTGTCAGCCCATTTCTAGGCCACCCGAACTAATACCTCCTTCGAGGCCTTTTGTGTTTCAAAACCCAACAACTAAGGTTTCTCCTGTTGAGTTGCCACCAAGTTCTCAAAATATACGGATAATTGAGGAGACACCTAAACCAAAGTTGAAGCCGCTGCATTGGGATAAAGTGAGAGCTAGTTCTGATCGTGAAATGGTGTGGGATCAGTTGAGGTCAAGTTCTTTTAAATTGAACGAGGAAATGATGGAAACATTGTTTGTTGTGAACACTCCAAATCCAAAACCAAAGGATGCTACTCCACGCTCAGTTCTTCCCCCGCCAAATCAAAAGGATAGAGTACTTGATCCTAAAAAGTCGCAAAACATTTCAATTTTGCTAAGAGCACTTAATGTGACTATAGAAGAAGTTTGTGAAGCGCTATTAGAAGGCAGTGCTGATACACTTGGAGTAGAACTACTTGAAAGCTTGTTAAAGATGGCACCAAGCAAGGAAGAAGAGTGCAAATTGAAGGAACACAAAGATGACTCCCCAACCAAGCTTGGTCCTGCTGAAAAATTTCTGAAGGCCGTGCTTGATGTACCTTTTGGATTTAAAAGGGTGGAAGCAATGCTTTACATAACTAATTTTGAGTCTGAGGTGGAGTATCTCAGGAAATCTTTTAAAACTCTAGAGGTTGCATGTGAAGAGCTTAGAAACAGTAGAATGTTCATGAAGCTTCTGGAGGCTGTTCTTAAAACTGGGAACCGCATGAATGTGGGGACAAACCGTGGTGATGCACACGCCTTCAAGCTTGATACACTTCTCACGCTTGTCCATGTCAAAGGCGCAGATGGGAAAACTACTCTATTGCATTTTGTTGTACAGGAAATTATAAGAACTGAAGGGGCTCGACTCACAGGTACCAATCAAACTCCAAACACTACTTCAATTGAAGATGCCAACTGCAGGAGGCTTGGTCTGCAAATTGTATCCAGTCTGAGTTCAGAGCTGGCAAATGTGAAGAAGGCTGCTGCTATGGATTGGGAAGTGCTCAGCAGTGAAGTCTCTAAACTTTCCAAAGGAATTGTTAACATTGTGGAGGTTGTGCAATTAAATGAAACAACAGAGTCAGATGAAAGCTGCCAGAAATTTTCAGAGTCAATGAACAAATTCATGAGAATGGCTGAGGAGGAGATTCTAAGAATTCAAGCCCAAGAAAGTGTTGCTTTGTCCCTTGTGAAGGAAATTACAGAATACTTCCATGGAGACTTGGCAAAGGAAGAAGCTTATCCTTTCAGAATCTTCATGGTCGTAAGAGACTTTCTGACAGTTCTTGATCGGGTCTGCAAAGAAGTTGGTATGATAAATGAGCGAACCATGGTCAGTTCTGCCCATAGATTTCCAGTTCCAACAAATCCAATGCTTCCACAACCCCTTCCTGGATTAATTGGAAGGCGACAATACAGTTCTTCAGACGACGACAGTCCATCTCCATAG 3354 0.4592 MCTFFIFFLLFSFSPQLLTSKPFVSSSRRVLHQPFVPLDNVPPSQPSNPPPPSPSPPNPKHPVSTTTPDQSPPFFPTYPSPPPPPSPATFASFPANISSLVIPQTPKSKSSSGKLVGVTISAVVCAIIVVGVSAFVYCRRKRKRYSLDEKILRSDSSLRLFPANAENRNGSRKVRHTSSAISEFLYLGTAVDSQGVDDRPDSRTNNGGAAALDPRKMDSPELQPLPPLSRQAARQQHEAGRSDGGSTTADEDEEEFYSPNRSLGGRESSSGTGSGSRRAFAVIAGENFGGRSSKSSSSSYSSSTSSSPDRSHSISLSPPISSSPRRSQPKSPETSVVHSISSPPNPLAPQTQNEALLAGERNSLSSSSLSSPHRNQVASPALAPVYNQYVQSSSMSSSSSTPERAFAQDGQSPLLSPLSLSPNRALETNPDGAVGASDVSFRTRKPSPSPVFSSPERNVKNSHASPILSNAFSEGVEKNACASPRLSNASDGSGKSLSSAFSLPSSPEKVLEQSLYQSPRISSFSDRYRQSPLSSRPLSPTLLSSPEMELNTISSQLATFDNIFGQNEGFSAPSLLSQPKHWEIPVLSTPIVQPRRVSPPPPPPLPPRPSQQHRKQWKIPAPSTPICQPISRPPELIPPSRPFVFQNPTTKVSPVELPPSSQNIRIIEETPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKLNEEMMETLFVVNTPNPKPKDATPRSVLPPPNQKDRVLDPKKSQNISILLRALNVTIEEVCEALLEGSADTLGVELLESLLKMAPSKEEECKLKEHKDDSPTKLGPAEKFLKAVLDVPFGFKRVEAMLYITNFESEVEYLRKSFKTLEVACEELRNSRMFMKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLTLVHVKGADGKTTLLHFVVQEIIRTEGARLTGTNQTPNTTSIEDANCRRLGLQIVSSLSSELANVKKAAAMDWEVLSSEVSKLSKGIVNIVEVVQLNETTESDESCQKFSESMNKFMRMAEEEILRIQAQESVALSLVKEITEYFHGDLAKEEAYPFRIFMVVRDFLTVLDRVCKEVGMINERTMVSSAHRFPVPTNPMLPQPLPGLIGRRQYSSSDDDSPSP 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 1088 1117 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 262 276 - -
Glsi06g1454 1117 Gene3D Formin, FH2 domain 667 1073 IPR042201 -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 39 63 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 289 426 - -
Glsi06g1454 1117 PANTHER FORMIN-RELATED 461 1104 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 195 466 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 593 613 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 442 466 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 594 610 - -
Glsi06g1454 1117 SMART it6_source 665 1079 IPR015425 -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 35 81 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 716 740 - -
Glsi06g1454 1117 MobiDBLite consensus disorder prediction 483 544 - -
Glsi06g1454 1117 Pfam Formin Homology 2 Domain 669 1064 IPR015425 -
Glsi06g1454 1117 ProSiteProfiles Formin homology-2 (FH2) domain profile. 665 1090 IPR015425 -
Glsi06g1454 1117 SUPERFAMILY Formin homology 2 domain (FH2 domain) 599 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1454 Glsi-ChrGlsi06 56862861 56866770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1454 617 1106 FH2 protein (formin) Gene Family AT3G25500 73.887 0.0 738