Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1438 ATGTGCAACCAAGTGGTTACTATAGAAGAGAAATATTCTGATGGCCTCGATGCAGACATTGTTGTAAATTCCATTTGTCCGACTGAGTCTGGTTCAAGTTTTTGTGATTGTTATCACGCTTTCCCTAGGCCTCAGCCGCTGCGTTGCTCACAATTCTCTCTTTCGCGAGCAGATCGCGGCTCAATGGCATACGTTAAGGCTCTGAAATCAAAGGCCTACTTCAAGAGGTATCAAGTTAAGTTCAAGAGAAGAAGAGAGGGCAAAACAGATTACCGAGCCAGGATTCGATTGATTAATCAGGACAAGAACAAGTACAACACCCCAAAATACCGCTTTGTGGTTCGATTTACGAATAAAGATGTCATTGCCCAAATAACATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCAGCTTATGCACATGAGCTGCCACACTATGGTCTTGAAGTAGGTCTCACAAACTATGCTGCAGCCTATTGCACTGGACTACTTTTGGCCCGTCGGGTCCTTAAAATGCTTGAAATGGATGAGGAGTATGAAGGGAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAGCCTGCTGAGACCAGGAGGCCGTTCCGTGCCCTCCTTGATGTTGGTCTACTTAGGACTACAACTGGGAATCGTGTCTTTGGTGCCCTTAAGGGAGCATTGGATGGAGGCCTAGATATTCCTCACAGTGACAAGAGGTTTGCTGGTTTTAATAAGGAGAAGAAGGAGCTTGATGCTGATGTTCACCGCAAATATCTCTATGGTGGTCACGTTGCTGCCTATATGAAGACTTTGATGGAAGATGAACCAGAGAAATACCAGTTGCATTTCAGTGAATATATCAAGCGAGGATTGGAGGCTGATGGACTTGAGGAGATGTACAAAAAGGTTCATGCTTCCATTCGTGCTGAACCCACCACGAAGAAGTCAGAGAAGCAGCCACCAAAGGAACATAAGAGGTACAACCTAAAGAAGCTTACCTATGAGGAGAGGAAGGCTAAGTTGATTGCACGGTTGCAGGCTCTCAACTCAGCAGTTGATGCTCCTGAAGATGATGAGGACGACGAAGAGTGA 1092 0.4542 MCNQVVTIEEKYSDGLDADIVVNSICPTESGSSFCDCYHAFPRPQPLRCSQFSLSRADRGSMAYVKALKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDVIAQITSASIAGDIVLAAAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKEKKELDADVHRKYLYGGHVAAYMKTLMEDEPEKYQLHFSEYIKRGLEADGLEEMYKKVHASIRAEPTTKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAVDAPEDDEDDEE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 205 224 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 267 287 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 81 100 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 104 123 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 225 244 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 PRINTS Ribosomal protein L5 signature 145 165 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 SUPERFAMILY Translational machinery components 72 312 - -
Glsi06g1438 363 PANTHER RIBOSOMAL PROTEIN L5-RELATED 62 351 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 FunFam 60S ribosomal protein L5 62 352 - -
Glsi06g1438 363 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 75 236 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 Coils Coil 331 351 - -
Glsi06g1438 363 Hamap 50S ribosomal protein L18 [rplR]. 75 307 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Glsi06g1438 363 Gene3D - 62 352 - -
Glsi06g1438 363 MobiDBLite consensus disorder prediction 307 330 - -
Glsi06g1438 363 Pfam Ribosomal L18 C-terminal region 296 349 IPR025607 -
Glsi06g1438 363 CDD Ribosomal_L18_L5e 102 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1438 Glsi-ChrGlsi06 55994554 56001568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1438 62 351 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 83.103 0.0 508