Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1431 ATGCTGCTTGGGCAAGCTTGTCCTGTAAACTTCATCTCCAAGCCCAGTCGCTTGGAATTGCAATGTCAAAGCAATGCCCGTCTCTTCTTCTCCGGTCAGACTTTTTTCTGTGACATCACATGTACGAAAAAGTTGCCCAAAAGTGTTGGAAATGTGGTTCTCGCTAGAGCTGGGTATTCTCCTACGCCCAAAGACGTCCTCTCTTGGAATCCTTCCACAGCCAACAATGGGTTGAACCCGAATTTGGAGAATTCCTCAGATATAAGCACACCGAGAACAGATAGCTCTTTAACTGAAGACATTGAGTGTGTTCCAGATACTATAAATAGTGATTCTTTAGTAAACTCTAAGAGAAGGTTATCTGGGAGTTTTGGCAGACTGAAAGCACAGAAAGTGAAAGCTCTCATCCACAGAACTTCTCGCATGAAGCAGGAAAGAAGCAGCAATGGTGATAACCTAATTGTAGAACATGAAGCATTAGGGAGATCTATTAAAGATAACTCTAATCTTGAATCATTTGAGAAAAAGAAAAGAGAGGATACACTCAACTATCAAGAAAGAGTTTCTAGATCTCACCAGTCACATCAAAACAGCGATGTCAAGCAAATAACAGGAATAGAAGAAGACTTGGAACAGTCTGAAAACACTGTAAGTCTTGGATTTATTCCACACAGAGGGTATCAGAATATACCCAATAAATATCAAAACTCTGACAACAGGATAGTAAGTTCAGGTATATCAGTTGCAAGACATTCTGACTCTCATGTAAGAGGATGGGATAAGGGAAGATCTTTGCGCACTTTTAAGTCCGAATCACACATTCTAAAGGAACAAAAAAAAACATTGGCTGACAGTGATTTTTTCAGTCGAAAGTCCTTTAAAGATCTTGGGTACAGTGACTATATGATTGAATCTCTGGCAAAGCAGTTTTTTCTCCGCCCTTCACATATACAGGCCATGGCATTTGCGCCTGTAATTAGTGGAAAGACCTGTGTCGTAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCATATCTTGCACCGATAATCCAGCATCTTAGACAAGAAGAACTGGAAGGTTGTAGTAAATTTTCTTCACAAGCTCCTCGAGTGGTTATATTGGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCGATGTCCAAATCTGGGGTTCGATTCAAATCTATGGTTGTAACAGGTGGCTTTCGGCAGAGAACTCAACTGGAAAATTTACAGCAGGGTGTTGATGTTTTAATAGCAACGCCTGGCCGTTTTATGTTCCTGATCAAGGAAGGCTACTTGCAGTTGACAAATCTAAGATGTTCAGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTTGAAGTGGCGCTTCAGTGCTTGATTAATTCTTCACCAGTTGCCTCTCAATATTTATTTGTGACTGCAACTTTACCAAGAGATATTTACAATAAACTAATTGAAGTTTTTCCTGACTGTGAAGTGATCATGGGACCTGGCATGCACCGGATAAGCCCACACCTTGAGGAGGTTCTAGTGGATTGTAGTGGAGCTGATGGACAAGAAAAAACTCCTGATACAGCATTTTTAAATAAGAAATCTGCTCTTCTGCAGCTTGTGGAAGGAAGTCCTGTCCTAAAAACCATTGTATTCTGTAACAAAATTGAAACATGTAGAAAAGTTGAGAATGTTTTGAAGCGTTTTGATAGAAAAGAAACTCGTATACAAATTCTACCATTCCACGCTGCCATGACACAAGAATCACGGCTTGCTAATATGGAAAAGTTTACAAGTTATCCATCAAAAGAAGTCTCCCAGTTTTTGGTTTGCACAGACAGAGCATCACGGGGAATTGACTTTGCTGGAGTGGATCATGTCATACTTTTTGACTTCCCACGTGATCCAAGTGAATACGTACGTCGTGTTGGAAGAACTGCCAGAGGTGCTGGTGGAAAGGGCAAGGCATTTATCTTTGTGGTAGGCAAGCAAGTATCCCAAGCACGTAAAATAATTGAAAGAAATCAAAAGGGTCACCCATTACACGACGTACCATCTGCCTATGAGATGATGAAGTAG 2097 0.4077 MLLGQACPVNFISKPSRLELQCQSNARLFFSGQTFFCDITCTKKLPKSVGNVVLARAGYSPTPKDVLSWNPSTANNGLNPNLENSSDISTPRTDSSLTEDIECVPDTINSDSLVNSKRRLSGSFGRLKAQKVKALIHRTSRMKQERSSNGDNLIVEHEALGRSIKDNSNLESFEKKKREDTLNYQERVSRSHQSHQNSDVKQITGIEEDLEQSENTVSLGFIPHRGYQNIPNKYQNSDNRIVSSGISVARHSDSHVRGWDKGRSLRTFKSESHILKEQKKTLADSDFFSRKSFKDLGYSDYMIESLAKQFFLRPSHIQAMAFAPVISGKTCVVADQSGSGKTLAYLAPIIQHLRQEELEGCSKFSSQAPRVVILAPTAELASQVLDNCRSMSKSGVRFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFMFLIKEGYLQLTNLRCSVLDEVDILFGDEDFEVALQCLINSSPVASQYLFVTATLPRDIYNKLIEVFPDCEVIMGPGMHRISPHLEEVLVDCSGADGQEKTPDTAFLNKKSALLQLVEGSPVLKTIVFCNKIETCRKVENVLKRFDRKETRIQILPFHAAMTQESRLANMEKFTSYPSKEVSQFLVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAGGKGKAFIFVVGKQVSQARKIIERNQKGHPLHDVPSAYEMMK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1431 698 CDD DEADc 302 503 - -
Glsi06g1431 698 SMART helicmild6 566 656 IPR001650 -
Glsi06g1431 698 Pfam DEAD/DEAH box helicase 316 489 IPR011545 GO:0003676|GO:0005524
Glsi06g1431 698 MobiDBLite consensus disorder prediction 171 200 - -
Glsi06g1431 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 322 503 IPR014001 -
Glsi06g1431 698 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 165 695 - -
Glsi06g1431 698 MobiDBLite consensus disorder prediction 171 186 - -
Glsi06g1431 698 Gene3D - 255 503 IPR027417 -
Glsi06g1431 698 SMART ultradead3 310 518 IPR014001 -
Glsi06g1431 698 Pfam Helicase conserved C-terminal domain 539 655 IPR001650 -
Glsi06g1431 698 Gene3D - 527 690 IPR027417 -
Glsi06g1431 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 698 IPR001650 -
Glsi06g1431 698 MobiDBLite consensus disorder prediction 68 95 - -
Glsi06g1431 698 CDD SF2_C_DEAD 539 666 - -
Glsi06g1431 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 666 IPR027417 -
Glsi06g1431 698 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 291 319 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1431 Glsi-ChrGlsi06 55296921 55327048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1431 291 666 Eukaryotic Initiation Factors Gene Family AT3G13920 28.093 3.36e-28 116