Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1410 ATGAAGTGCTTTTACTACTTCAAAGATAAATCCAGGAGCTGGAGACAAAGATCAGCACCTGAGCTGAAAGAGCAAGAGAAATCTCAGTATTCAGGAGCTGATAGAATCACAAAGTCTTCATGCTCATCAACCTCGACTCCTGGTATACCAGATTTGTATGAGGAGAGGGCTGGTAATTTGCGGGTTTTCTCTTTCACAGAGCTAAGGCGTGCAACAAATGATTTCGATAGGCTTTTTAAGATAGGGGAAGGTGGATTTGGGAGTGTATATAAAGGTTCAATTCAGTCACTCGATGGAAATGGGGATACTGTTTTAGTTGCCATCAAAAGGCTGAACAAGGATGGATTACAGGGTCATAAGCAATGGTTGGCTGAAGTTCAATTTCTTGGTGTTTTGGAACACCCTAATCTCGTCAAACTCATTGGTTATTGTGCTGTGGATGGAGAAAGAGGGATCCAGAGACTACTTGTATATGAATACATGCCAAATGAAAGCTTAGAACATTATCTTTTTAATAGGGCGTTTGATCCTCTTTCTTGGAGAACAAGACTTGAGATACTACTTGGAGCAGCTCAGGGATTAGCTTATCTTCATGAAGAAATAGAAGTTCAGGTAATATATCGAGATTTAAAATCATCAAATGTATTACTGGATGAAAATTTTAGGCCAAAACTTTCTGATTTCGGACTTGCCAGGGAGGGACCAATGGCTGGCCATACTCATGTTTCAACTGCAGTGGTGGGTACATTTGGCTATGCTGCTCCGGATTACATTGAGACAGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTCGGTGTGGTACTTTATGAAGTTATTACGGGAAGGCGTTCATTGGAGAGAAATCGACCCAAAATGGAGCAGAAACTCTTGGAGTGGGTGAAACAATTTCCTGCTGATAGCAAAAGGTTCAGCTTGATAATGGATCCACGACTTGAAGGACAGTATTCTATCAATGCAGCACAAAAAATTGCCAAGCTTGCTGACAGTTGTCTTAGTAAAAGTGCAAAAGAGCGGCCAACAATGAGTCAGGTGGTTGAGAGATTGAAGCAGATAATCCAAACTTCAGATGAAGAAAATCCTTCAGAGATAAGTGGGCAAGCATCTGAAACTGACCTACCTGACCTCGAGGAGAAGCCAAATCAATCAGGCCGTTCAGAATTATGGAAAAAGAGGATGGCCCATCTTGCAAAGCTTGGTGAACATGTTGAGAGTGCTAATAGAAGAAGATTTATGATCCTCCAGAGGGCCAATGTTTCTTCATAG 1287 0.418 MKCFYYFKDKSRSWRQRSAPELKEQEKSQYSGADRITKSSCSSTSTPGIPDLYEERAGNLRVFSFTELRRATNDFDRLFKIGEGGFGSVYKGSIQSLDGNGDTVLVAIKRLNKDGLQGHKQWLAEVQFLGVLEHPNLVKLIGYCAVDGERGIQRLLVYEYMPNESLEHYLFNRAFDPLSWRTRLEILLGAAQGLAYLHEEIEVQVIYRDLKSSNVLLDENFRPKLSDFGLAREGPMAGHTHVSTAVVGTFGYAAPDYIETGHLTAKSDVWSFGVVLYEVITGRRSLERNRPKMEQKLLEWVKQFPADSKRFSLIMDPRLEGQYSINAAQKIAKLADSCLSKSAKERPTMSQVVERLKQIIQTSDEENPSEISGQASETDLPDLEEKPNQSGRSELWKKRMAHLAKLGEHVESANRRRFMILQRANVSS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1410 428 MobiDBLite consensus disorder prediction 17 31 - -
Glsi06g1410 428 MobiDBLite consensus disorder prediction 361 394 - -
Glsi06g1410 428 PANTHER OS01G0588500 PROTEIN-RELATED 34 360 - -
Glsi06g1410 428 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Glsi06g1410 428 SMART serkin_6 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1410 428 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 161 369 - -
Glsi06g1410 428 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Glsi06g1410 428 MobiDBLite consensus disorder prediction 17 50 - -
Glsi06g1410 428 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Glsi06g1410 428 CDD STKc_IRAK 81 359 - -
Glsi06g1410 428 MobiDBLite consensus disorder prediction 379 394 - -
Glsi06g1410 428 MobiDBLite consensus disorder prediction 361 376 - -
Glsi06g1410 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Glsi06g1410 428 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Glsi06g1410 428 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1410 428 MobiDBLite consensus disorder prediction 32 49 - -
Glsi06g1410 428 Gene3D Transferase(Phosphotransferase) domain 1 161 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1410 Glsi-ChrGlsi06 54113643 54118497 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1410 3 396 Glycoside Hydrolase AT3G07070 41.119 6.21e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi06g1410 PK_Tyr_Ser-Thr 4e-48 CL0016