Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1363 ATGTATGGTGGTGACGAAGTATCGGCCATAGTGATTGACTTGGGCTCCCACACATGCAAAGCCGGTTACGCTGGTGAAGATGCTCCCAAGGCTGTGTTTCCATCTGTTGTTGGAGCAATTGACCAAATGGACATTGATGAATCTGATAATAATGAAAAGAACTCTGCTTCTGCTGTGGATTCGAAAAACAATGTCAGAAATCTTGATTCTGACAAAACCAAGGGAAAACGCAATTTGTATGTGGGATCACAGTCTTTAGGATATCGCAGAGACCATATGGAGGTGCTGTCCCCGTTAAAGGATGGAATTGTTGCTGACTGGGATATTGTTGACAGCATATGGGATCATGCATTAAGGGATTGCCTATTGGTTGATCCTAAAGAGCATCCAATGCTACTTGCAGAACCTTCGTCTAACACTCAACAACAGAGAGAAAGGACAGCGGAGCTTATGTTTGAAAAGTACAAAGTACCTGCATTATTTTTGGCCAAGAATGCTGTTCTGACATCTTTTGCTTCAGGGCGTGCAACTGCATTAGTTGTTGATGGTGGTGGAGGATCAACTACTGTTGCACCTGTACATGATGGTTATATTCTTCAAAAGGCTGTGGCAACTTCTCCTATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGTTTGGAAAGTAAAGGTATTGTGATAAAACCCCGGTATTCCTTTAAGAGAAAGGAAATTCGGCCTGGAGAGTTTCAGACTGTAGATCTTGATTTTCCAAATACAACTGAAAGTTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGATATCAAGGAATGTGTGTGCCGAGCTCCGGATACTCCATATGATGAGAGTGCATATTCAAACATTCCAATGACCCCATATGAGCTCCCTGATGGCCAAACAATTGAAATTGGAGCTGATAGATTCAAGATTCCGGATGTTCTTTTTAATCCATCCCTGGTTCAGACAATTCCTGGCATGGAGAGTTTTGCAGAGATTGCTCTTTCAGTTCGCGGACTGCCACATATGGTTATAGAGAGTATTAACAAGTGTGATGTGGACATTCGAAGAGAATTATTTAGTAGCATACTGCTTGCTGGTGGTACAGCTTCTATGCAACAATTGAAGGAACGCCTTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCTAGAGTAAAGGTATTGGCCAGTGGAAATGCGACTGAAAGGAGGTTCAGTGTTTGGATAGGTGGAAGCATATTAGCTTCTCTTGGCTCATTCCAGCAAATGTGGTTCTCCAAGTCTGAGTATGAAGAGCATGGAGCTTCCTATATCCAAAGAAAATGCCCATGA 1338 0.4268 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDESDNNEKNSASAVDSKNNVRNLDSDKTKGKRNLYVGSQSLGYRRDHMEVLSPLKDGIVADWDIVDSIWDHALRDCLLVDPKEHPMLLAEPSSNTQQQRERTAELMFEKYKVPALFLAKNAVLTSFASGRATALVVDGGGGSTTVAPVHDGYILQKAVATSPIGGEFLTDCLMKSLESKGIVIKPRYSFKRKEIRPGEFQTVDLDFPNTTESYKLYSQRVIASDIKECVCRAPDTPYDESAYSNIPMTPYELPDGQTIEIGADRFKIPDVLFNPSLVQTIPGMESFAEIALSVRGLPHMVIESINKCDVDIRRELFSSILLAGGTASMQQLKERLEKDLLEESPQAARVKVLASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1363 445 PANTHER ACTIN 9 438 IPR004000 -
Glsi06g1363 445 Gene3D Actin; Chain A, domain 4 210 323 - -
Glsi06g1363 445 Gene3D - 389 445 - -
Glsi06g1363 445 Pfam Actin 4 444 IPR004000 -
Glsi06g1363 445 FunFam actin-related protein 4 387 445 - -
Glsi06g1363 445 CDD NBD_sugar-kinase_HSP70_actin 97 197 - -
Glsi06g1363 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Glsi06g1363 445 Gene3D - 1 182 - -
Glsi06g1363 445 Gene3D - 183 384 - -
Glsi06g1363 445 SMART actin_3 7 445 IPR004000 -
Glsi06g1363 445 MobiDBLite consensus disorder prediction 45 75 - -
Glsi06g1363 445 FunFam Actin-related protein 4 1 183 - -
Glsi06g1363 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1363 Glsi-ChrGlsi06 45880024 45926458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1363 1 444 Cytoskeleton Gene Families AT5G09810 36.689 1.03e-92 283