Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1352 ATGGAAGGGGAGAGAGGAGTTCCCAATTATGAGCTTCAGGTTTCGTTCACGAACACCCCACAAGCCATCCACGAACTGGGTTTTGTGCAATTTGAAGAGAACCAGGTCCTAAGCTTTTTGGCTTCCTCTGCACAATCACAATCTTCTCAGCTGTCTCAATCGCTAAACGGAGGCAGTGGCAGTACCGCCACCGCTACCGCCACAACCACAGCCACCACCGCCATCGGGTTTAGCCATAACGACCTTGTGACCAGAACTCCTTGGAACAACGACCAGGTGGGAACTCTGGATCCCAAGGATGTCAATGATGAAAACTGCACTGGAAACGCTAGTGAAGGCAGCAATACATGGTGGAGGAGTGCAGCATCAGAGAAAAGCAAGGCGAAAGTGAGGAGGAAGCTGAGGGAGCCGAGGTTTTGTTTCCAAACTAGAAGTGATGTGGATGTGCTTGATGATGGCTACAAATGGAGGAAGTATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCCAGAAGCTACTATCGCTGCACCCATAGCAACTGCAGGGTGAAGAAGAGGGTTGAACGACTGTCGGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAACCACTCTCCATGCGACGACTCGAATTCATCTGAACATGAATGCTTCACCTCATTCTAA 675 0.4948 MEGERGVPNYELQVSFTNTPQAIHELGFVQFEENQVLSFLASSAQSQSSQLSQSLNGGSGSTATATATTTATTAIGFSHNDLVTRTPWNNDQVGTLDPKDVNDENCTGNASEGSNTWWRSAASEKSKAKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1352 224 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 211 IPR044810 GO:0003700
Glsi06g1352 224 FunFam WRKY transcription factor 57 136 210 - -
Glsi06g1352 224 ProSiteProfiles WRKY domain profile. 145 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi06g1352 224 SUPERFAMILY WRKY DNA-binding domain 142 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi06g1352 224 Gene3D WRKY domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi06g1352 224 Pfam WRKY DNA -binding domain 151 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi06g1352 224 MobiDBLite consensus disorder prediction 86 122 - -
Glsi06g1352 224 SMART WRKY_cls 150 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1352 Glsi-ChrGlsi06 39835752 39842989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1352 3 224 WRKY Transcription Factor Family AT2G44745 56.087 3.64e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi06g1352 WRKY 1.4e-24 CL0274