Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1327 ATGATGCCTCCTAGGACGGTTAAGAGAGGGGCTGCGGCGGCAGGGGCGAAGAGAGCGGTCAGAGCTACCAGAGGCACGCCGAAGTCTGCCCAGAACCAGCAGCATCTTGAAGCTGCAGAAGAGGTTGTGAAGCGTGAAGAAAAGCCAGCTGTTGAGGAGGAGGTCAAGATCGATGAGAAGCCAGTGGTTGAGGATAAACCGGTTGTTGAGGAGAAACCTGTTGTGGAGGAGAAGCAATTGTCTATTGATGTGAATCAAGTTGCTTCAGAGGCTGAAGTAGAAGCGGATCTTGTTACTAATGGGTTGGCTGATGTGAAAAACGATGACGAAGAGGTTAAGGAGTCAATTGATGAATATGAAAAAGATGAACGCTTAGATCTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAACAAGATGAGGTTCAGGAGGTAGGAGATGAAGTAGAGGAAGAACCTGAAGAGAATGTAGGTGAAGAAGAGGGTGATATGGGTGAGGAGGAAGTGGAAGATGTTCATGGAGAACGTGAAGGTGATGAGGAAGATGAGCATGCTGTTGAAGAGCATGAGCATACAGAGATGGCTGATGTTGAGGAAGAGGAACATCATGAAGGTTTGAAGGAGAGGAGGAAGCGCAAGGAATTTGAAGTATTTGTTGGGGGCTTAGATAAAGATGCTACTGAGAATGATCTGAGGAAGGTCTTTAGTGCAGTTGGCGAGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAACAAGGGTTTTGCATTCTTGCGTTTCGCAACTGTGGAACAAGCAAAACGAGCTGTAACAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACACCAAGTCAGGATAGTGATACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGAGTTGATAATGTTGAGGATTTGACTTTAGTAGAAGATAGTAACAATGAGGGAATGAATCGTGGATTTGCATTTTTAGAATTTTCATCTCGCTCAGATGCTATGGATGCTTTTAAGCGACTGCAGAAGAGAGATGTGGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGGTCTGCCTCCTTCATGGGATGAGGATCGTGTCCGGGTTCTTCTTAAGAAATATGGGGAGATCGAGAAGATTGAGCTTGCTAGAAACATGCCATCTGCCAAGAGGAAGGATTTTGGATTTGTTACATTTGATACACATGATGCTGCTGTGACATGTGCTAAAAGCATTAACAATGCAGAGTTAGGTGAAGGAGACAGCAAGGCAAAAGTTAGGGCCAGATTATCGAGACCCCTTCAGAGAGGCCATGGAAAACATGTTAGCCGTGGGGACTTCCGTACTGGTCGTGGGTCTGGAAGGGTTGCAAGGCCATCATGGAGCCGACCTACACCTCGCAGTTTTCCTGCCCGTGGGATAAGAGGCATTGGAAGTCGTGTCCCACCAGTCAGGCCTGTTAGTGTGAGAGATAGACGTCCAGTCATGTCCATGCCAGTAAGAGCCAGGCCGGTGGCTCCTCCAGCTAGATCCTATGATAGGAGACCAGCTGTTCCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGAAGGGAGGATCTGCCACCTCCAAGAAGCAGAGTTGCTGTAGATTATGGCTCTAGGGTGGTCTCTGAGAGACGCCCATCTTATAGGGATTATCCAACCCGTGCCCCTGCTTACTCTGAGCTTCCTAGAAGTACATCTCGTTCTGCACCAAGGAGGGGTTATGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCACCTCCCCATCCAAGTTACCGTGAAGGACGCCCTCGTGATTATGACACTATCTCTGGCTCAAAACGCCCATATGCTGCCATAGATGATGTTCCTCCACGATATGCAGATACTGGTGCTCGTCAGTCAAGAGCTCGATTGGACTATGACTATGGAGGTAGTGCTTCACAGTATGGGGATGCTTATGGTGATAGGCTTGGGAGATCTAGTATGGGATATGTTACAGTGGAGGTTCTTTTGGCGGTAGTGATGTTGGTGGTATGTACTCGTCAAGTTATGGTGGTGATTACATGTCTCGTGGGAATGATGTTGGCGGCAGCTCATACTCATCAATGTATCCTGGCAGAGGTGTGGGTGGTAGCAGTTACATGGGTGGTAGTGGATCTGGCTCTTATTATTAAGATATGA 2361 0.4655 MMPPRTVKRGAAAAGAKRAVRATRGTPKSAQNQQHLEAAEEVVKREEKPAVEEEVKIDEKPVVEDKPVVEEKPVVEEKQLSIDVNQVASEAEVEADLVTNGLADVKNDDEEVKESIDEYEKDERLDLEDNDPEYEPEEYGGVDYDEKEIEQDEVQEVGDEVEEEPEENVGEEEGDMGEEEVEDVHGEREGDEEDEHAVEEHEHTEMADVEEEEHHEGLKERRKRKEFEVFVGGLDKDATENDLRKVFSAVGEVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRVLLKKYGEIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNAELGEGDSKAKVRARLSRPLQRGHGKHVSRGDFRTGRGSGRVARPSWSRPTPRSFPARGIRGIGSRVPPVRPVSVRDRRPVMSMPVRARPVAPPARSYDRRPAVPAYPKSSMKRDYGRREDLPPPRSRVAVDYGSRVVSERRPSYRDYPTRAPAYSELPRSTSRSAPRRGYVDDGYGQRFERPPPPPHPSYREGRPRDYDTISGSKRPYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYVTVEVLLAVVMLVVCTRQVMVVITCLVGMMLAAAHTHQCILAEVWVVAVTWVVVDLALIIKI 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1327 786 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 305 IPR000504 GO:0003723
Glsi06g1327 786 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 160 307 - -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 1 59 - -
Glsi06g1327 786 CDD RRM_SF 309 387 - -
Glsi06g1327 786 Coils Coil 144 164 - -
Glsi06g1327 786 Gene3D - 394 512 IPR012677 -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 579 593 - -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 103 120 - -
Glsi06g1327 786 SMART rrm1_1 405 480 IPR000504 GO:0003723
Glsi06g1327 786 SMART rrm1_1 308 387 IPR000504 GO:0003723
Glsi06g1327 786 SMART rrm1_1 228 301 IPR000504 GO:0003723
Glsi06g1327 786 Gene3D - 145 302 IPR012677 -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 197 221 - -
Glsi06g1327 786 SUPERFAMILY RNA-binding domain, RBD 306 471 IPR035979 GO:0003676
Glsi06g1327 786 MobiDBLite consensus disorder prediction 653 669 - -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 484 684 - -
Glsi06g1327 786 MobiDBLite consensus disorder prediction 121 196 - -
Glsi06g1327 786 FunFam RNA recognition water-stress protein1 394 515 - -
Glsi06g1327 786 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 471 IPR000504 GO:0003723
Glsi06g1327 786 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Glsi06g1327 786 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 375 IPR000504 GO:0003723
Glsi06g1327 786 MobiDBLite consensus disorder prediction 38 59 - -
Glsi06g1327 786 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 146 710 - -
Glsi06g1327 786 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 486 IPR000504 GO:0003723
Glsi06g1327 786 FunFam Heterogeneous nuclear ribonucleoprotein Q 308 390 - -
Glsi06g1327 786 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 391 IPR000504 GO:0003723
Glsi06g1327 786 MobiDBLite consensus disorder prediction 102 221 - -
Glsi06g1327 786 Gene3D - 307 390 IPR012677 -
Glsi06g1327 786 CDD RRM_SF 229 300 - -
Glsi06g1327 786 Coils Coil 102 122 - -
Glsi06g1327 786 SUPERFAMILY RNA-binding domain, RBD 223 305 IPR035979 GO:0003676
Glsi06g1327 786 CDD RRM_SF 406 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1327 Glsi-ChrGlsi06 33491407 33497065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1327 229 466 Eukaryotic Initiation Factors Gene Family AT1G49760 23.904 7.27e-15 76.6