LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g1315	ATGTGCACTCAGTTTTCGCAACTCGGTGCCGTCGTCGTCGATAGTTCCGACCCTTCAATAACGACCACGTTTCAGAATGCTGCTCCGGCGTACTCTCGGAGTTCGAGCTTCAGAAACGTTTTCTTAACAGAGAACTGGAGTGAGCTGCCACTAAAAGAAAACGACGCCGAGGATATGGTTATCTACGGGGCTTTGCGTGATGCCGCCCTTACTGGATGGCTTCCCTCTAATGTGATTGGTGCAACTTCAAGTGCAACCCAGGTGAAAATGCAGACAGCGGATATTGATCGGGGAGAGAATAAGAAAAATAATAATAATAATAATAATAATAGTACTGCAGTGGTGGTGGGGCGTGGGTTTTCCGCTCCGAGGGACAAGAGCCGTTACAAGGGAGTGCGGAGGAGGCCTTGGGGGAAGTACGCGGCGGAGATCAGGGATCCGAAGAAAAACGGGGCGAGGGTGTGGCTTGGGACTTACGAGAAGGCTGAGGATGCGGCTTTGGCTTATGACCGCGCCGCGTTTAAGATGCGTGGCTCCAAAGCTAAGGTGAACTTTCCTCACTTGATTGGCTCGGATCACGCTGAGCCTGTTCGAGTCAGTCTCAAGCGCCGTTCGCCGGAGCTGCTATCGTCTTCCTCATCCTGCTCAAGCTCAGAGAAGCGGAATAAGCTGATCCCTGGAGCCGTAGCAACTACTATGGAGCTGAATAAAGGGATTACGTGGCAATTTTCCACGGATAATGAAACCTGGTGGCAATAA	759	0.5138	MCTQFSQLGAVVVDSSDPSITTTFQNAAPAYSRSSSFRNVFLTENWSELPLKENDAEDMVIYGALRDAALTGWLPSNVIGATSSATQVKMQTADIDRGENKKNNNNNNNNSTAVVVGRGFSAPRDKSRYKGVRRRPWGKYAAEIRDPKKNGARVWLGTYEKAEDAALAYDRAAFKMRGSKAKVNFPHLIGSDHAEPVRVSLKRRSPELLSSSSSCSSSEKRNKLIPGAVATTMELNKGITWQFSTDNETWWQ	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g1315	252	MobiDBLite	consensus disorder prediction	90	114	-	-
	Glsi06g1315	252	FunFam	Ethylene-responsive transcription factor 2	127	187	-	-
	Glsi06g1315	252	PRINTS	Ethylene responsive element binding protein signature	129	140	IPR001471	GO:0003700\|GO:0006355
	Glsi06g1315	252	PRINTS	Ethylene responsive element binding protein signature	168	188	IPR001471	GO:0003700\|GO:0006355
	Glsi06g1315	252	ProSiteProfiles	AP2/ERF domain profile.	128	186	IPR001471	GO:0003700\|GO:0006355
	Glsi06g1315	252	CDD	AP2	127	188	IPR001471	GO:0003700\|GO:0006355
	Glsi06g1315	252	Gene3D	AP2/ERF domain	127	187	IPR036955	GO:0003700\|GO:0006355
	Glsi06g1315	252	SMART	rav1_2	128	192	IPR001471	GO:0003700\|GO:0006355
	Glsi06g1315	252	PANTHER	DNA-BINDING DOMAIN	93	218	IPR044808	GO:0003700\|GO:0009873
	Glsi06g1315	252	SUPERFAMILY	DNA-binding domain	127	187	IPR016177	GO:0003677
	Glsi06g1315	252	Pfam	AP2 domain	127	178	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g1315	Glsi-ChrGlsi06	28515282	28516040	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g1315	31	225	AP2-EREBP Transcription Factor Family	AT2G44840	53.571	1.15e-62	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi06g1315		AP2	1.3e-14	CL0081