Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1314 ATGGGTTCCAATTTTCCTCTTTCAGTATCTGTTCATCAATGCCTACTGCGACCAGTTGATTCCAAGTCTCATATGAATGTTTCGATCCCAAATATTTGCCTTTCCCCTCCAAGGAACAACCCTAGTTCAAGCATTAACTGCGATGGCAGTTCCGGTGTTACTAACTCTGATAACAGTGTCTTTTTCAGTCAGCATGATGACTCCATTAGCCTCAAATGCATTCGAGCAGAGGGATTGGGCAAGTTTGCTGCGAAAATCAGGGACCCAAAGAAGAACAGTGCTAAGGTTTGGCTCGGAACTTATGAGACAGAAGAGGATGCAGCTTTGGCTTATGACAGAGCTGATTTCTCCCGCACCTGA 360 0.45 MGSNFPLSVSVHQCLLRPVDSKSHMNVSIPNICLSPPRNNPSSSINCDGSSGVTNSDNSVFFSQHDDSISLKCIRAEGLGKFAAKIRDPKKNSAKVWLGTYETEEDAALAYDRADFSRT 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1314 119 PANTHER DNA-BINDING DOMAIN 72 116 IPR044808 GO:0003700|GO:0009873
Glsi06g1314 119 ProSiteProfiles AP2/ERF domain profile. 70 119 IPR001471 GO:0003700|GO:0006355
Glsi06g1314 119 SUPERFAMILY DNA-binding domain 77 116 IPR016177 GO:0003677
Glsi06g1314 119 Gene3D AP2/ERF domain 72 117 IPR036955 GO:0003700|GO:0006355
Glsi06g1314 119 SMART rav1_2 70 119 IPR001471 GO:0003700|GO:0006355
Glsi06g1314 119 Pfam AP2 domain 75 116 IPR001471 GO:0003700|GO:0006355
Glsi06g1314 119 CDD AP2 80 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1314 Glsi-ChrGlsi06 28206100 28210654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1314 69 116 AP2-EREBP Transcription Factor Family AT2G44840 66.667 7.32e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g1314 AP2 1.5e-06 CL0081