Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1313 ATGGATTACAAGACCACTTTTGACTCCGATCTTGCTCTTCTGGATTTAATCCGAAGCCACCAACTCGATGATGATTTTGATGCTCTCATGACATTTCTGGCCATATTCACTGGCGATGTCTCTAGGATGATAGAGAATGTACGCACCGGATTACACGAACAACAAAATAGGAGGAGTTATAAGGGAGTGAGGCATAGGCCGTGTGGGAAATATGCTGCAAAGATTAGGCATCCAAAGAAGAATGGTGCCAAGGTGTGGCTTAGGACTTACGAGACAGTTGAGGATGCATATTTGGCTTATGATCAAGCAGATTTCATGATATGGGGCTCGAAGTCTAAGCTGAATTTTCCACACCTTATTAGCTCGATTGTGTCAAAACTTCTAAGAATGACCAGAAAGTGCCATTTTCTTGAGCCTTGGCCACCGTTAATAACTTTGGAGGATGGCTCCCCGGAGTTGATAAAGAGGAAGAGTGGAGTAGGCATCTTGGACACATTTGAGTCGAATAATGTAAGCCAAGCCGAGGAGTTGGGGATAGGGTCCATAGCATTGTTCGACCAGTTGTCATGGTCCTCTCAAGAGCAATTTAACTATAATGGTGAAGGGGGTGGTTTTGTGGCAATAGTGTTTCCTTTAGTTTTCATCATGGCAGATGGAAGATAG 663 0.4389 MDYKTTFDSDLALLDLIRSHQLDDDFDALMTFLAIFTGDVSRMIENVRTGLHEQQNRRSYKGVRHRPCGKYAAKIRHPKKNGAKVWLRTYETVEDAYLAYDQADFMIWGSKSKLNFPHLISSIVSKLLRMTRKCHFLEPWPPLITLEDGSPELIKRKSGVGILDTFESNNVSQAEELGIGSIALFDQLSWSSQEQFNYNGEGGGFVAIVFPLVFIMADGR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1313 220 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Glsi06g1313 220 CDD AP2 60 119 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 PANTHER DNA-BINDING DOMAIN 53 145 IPR044808 GO:0003700|GO:0009873
Glsi06g1313 220 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Glsi06g1313 220 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1313 Glsi-ChrGlsi06 28124436 28127724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1313 49 139 AP2-EREBP Transcription Factor Family AT2G44840 55.435 1.53e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g1313 AP2 1.9e-09 CL0081