Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1312 ATGGATTACAAGACGAGTTTTGAATCCGATCTTACTCTCCTGGAATCTATACGAAGCTACCTTCTTGAAGACGATTCTAATGCTTTCATGGCATTTCCGGCCACATTCACAGGCGACGCTCCGGTTTGCTACCGGAGTTCTAGCTCTGCTGGGACGATGGAGAACGGCGACACTGACATTAACTCTCCATCTTTTTCATCGAAACAAACTAACATTGCCGTCGCGGTTTGTAGTGCTGATAGTGAGGTCGCTGCGGTGGCGAGTGGGGTTCACACGCCACCACGAGGGATAAATTACAGGGGAGTGAGGCGCAGGCCGTGGGGCAAATATGCTGCAGAGATTAGGGATCCAAAGAAGAAGGGCGCCAGGGTGTGGCTTGGGACTTACGAAACAGCTGAGGATGCAGCTTTGGCTTATGATCTGGCCGCTTTCAAGATGCGCGGTTCCAAAGCGAAGCTGAATTTTCCACATCTTATTGGCTTGAATGTGTCGGGACCACTGAGAGTGACTGGAAAACGCCGGAGCCTTGTTCACCGTCATATACTTTGGAGGGTGAGCTGCCGGTGGTGA 570 0.514 MDYKTSFESDLTLLESIRSYLLEDDSNAFMAFPATFTGDAPVCYRSSSSAGTMENGDTDINSPSFSSKQTNIAVAVCSADSEVAAVASGVHTPPRGINYRGVRRRPWGKYAAEIRDPKKKGARVWLGTYETAEDAALAYDLAAFKMRGSKAKLNFPHLIGLNVSGPLRVTGKRRSLVHRHILWRVSCRW 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1312 189 PANTHER DNA-BINDING DOMAIN 69 157 IPR044808 GO:0003700|GO:0009873
Glsi06g1312 189 SMART rav1_2 98 162 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 Pfam AP2 domain 98 148 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Glsi06g1312 189 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Glsi06g1312 189 ProSiteProfiles AP2/ERF domain profile. 98 156 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 CDD AP2 98 158 IPR001471 GO:0003700|GO:0006355
Glsi06g1312 189 FunFam Ethylene-responsive transcription factor 2 98 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1312 Glsi-ChrGlsi06 27911427 27911996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1312 84 175 AP2-EREBP Transcription Factor Family AT2G44840 72.043 1.84e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi06g1312 AP2 1.2e-15 CL0081