Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1309 ATGAGGTCTGCTCTTATTGGAGAGTCACTTCCAGTCACAAAAATTCCTGGAGATGGAATTTATTCTGGTTCAATTTGCAAGCAAGGTGAAATTGAAGCTATTGTTGTTGCTACTGGAGTTCACACATTCTTTGAAAAAGCAGCTCATCTTGTGGAAATTACTACACATATTGGGCATTTTCAGAAGGTTTTAACATCTATAGGAAATTTCTGCATCTGCTCTGTTGCTGTGGGAATGGTTATTGAAATCATAGTAATATATGGGATTCAGAAGAGGAGATACAGGGTTGGTATTGATAACCTCCTTGTGCTACTAATTGGTGGGATCCCTATTGCAATGCCGACTGTTCTTTCTGTTACAATGGCTATTGGTTCACACCGATTGTCTCAGCAGATTCTAAATCTCGCACATAACAAATCAGAAATTGAACGGAAGGTACATGCAATTATTGACAAGTTTGCAGAACGTGGGCTTCGGTCTCTAGCAGTTGCCGGCCAGGAAGTACCTGAGGGAACTAAAGACAGTCCAGGAGGACCCTGGGAATTTGTTGGCCTTCTCCTTTTGTTTGACCCTCCTCGACATGATAGTGCAGAAACAATCAGAAGAGCTCTAAATCTTGGAGTGAGTGTCAAAATGATTACTGGTGACCAACTTACAATTGCTAAGGAAACAGGAAGGCGTCTAGGCATGGGCACTAATATGTATCCTTCTTCATCTCTGCTTGGTGAGAATAAAGATGAAGCAGTTTCTGCTTTCCCTATTGATGAGCTCATTGAGCATGCTGATGGTTTTGCTGGTGTCTTTCCTGAGCATAAGTATGAAATTGTGAAGAGATTACAAGCTAGAAAGCACATATGTGGGATGACTGGTGATGGAGTGAACGATGCGCCTGCCCTAAAGAAAGCTGACATAGGTATTGCAGTAGCAGATTCCACCGATGCTGCCAGAAGTGCTTCTGACATAGTTCTCACAGAACCTGGGTTGAGTGTGATCATTAGTGCCATTTTAACAAGCATATATGCTGTCTCTGTCACTATACGTATTGTGCAGGACCATTTCAATGTGAGAAACTTCAATTCACACGTTCGCAACATGTCGGATGATGCGATCTCTACTGAACTGAAAGAGATGATGGGATCAGCTGCGTATCTTCAAGTCAGTACAATCAGTCAGGCCTTAACTTTTGTGACCAGGTCCAGGGCGTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTATTGCCTTCATTATTGCTCAGCTGAATGCATTCACCAACAAAAATGACTTTGGAAGAGAAGCTCGTGAAGCTGCATGGGCTGCTGAGCATAGAACCCTACACGGCCTTCAGTCTGCTGAGACAAAGATGTTTTCAGAGAAGCATACCTTCAGGGAAATAAATACAATAGCAGAAGAGGCTAAGAAGTCAGCAAAGATAGCAAGGTCATTCATCAAACTTCTCTTTTTTCTTATATCTTCTATTGAAACTTAA 1491 0.4219 MRSALIGESLPVTKIPGDGIYSGSICKQGEIEAIVVATGVHTFFEKAAHLVEITTHIGHFQKVLTSIGNFCICSVAVGMVIEIIVIYGIQKRRYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQILNLAHNKSEIERKVHAIIDKFAERGLRSLAVAGQEVPEGTKDSPGGPWEFVGLLLLFDPPRHDSAETIRRALNLGVSVKMITGDQLTIAKETGRRLGMGTNMYPSSSLLGENKDEAVSAFPIDELIEHADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADSTDAARSASDIVLTEPGLSVIISAILTSIYAVSVTIRIVQDHFNVRNFNSHVRNMSDDAISTELKEMMGSAAYLQVSTISQALTFVTRSRAWSYTERPGLLLVIAFIIAQLNAFTNKNDFGREAREAAWAAEHRTLHGLQSAETKMFSEKHTFREINTIAEEAKKSAKIARSFIKLLFFLISSIET 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1309 496 PRINTS H+-transporting ATPase (proton pump) signature 289 305 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g1309 496 PRINTS H+-transporting ATPase (proton pump) signature 261 277 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g1309 496 PRINTS H+-transporting ATPase (proton pump) signature 320 345 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g1309 496 PRINTS H+-transporting ATPase (proton pump) signature 146 164 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g1309 496 Pfam E1-E2 ATPase 3 130 - -
Glsi06g1309 496 PRINTS P-type cation-transporting ATPase superfamily signature 1 14 - -
Glsi06g1309 496 PRINTS P-type cation-transporting ATPase superfamily signature 289 308 - -
Glsi06g1309 496 PRINTS P-type cation-transporting ATPase superfamily signature 312 324 - -
Glsi06g1309 496 PANTHER CALCIUM-TRANSPORTING ATPASE 351 423 - -
Glsi06g1309 496 Gene3D - 186 326 IPR023214 -
Glsi06g1309 496 Gene3D - 128 185 IPR023299 GO:0000166
Glsi06g1309 496 NCBIfam HAD-IC family P-type ATPase 264 343 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi06g1309 496 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 131 IPR023298 -
Glsi06g1309 496 Pfam haloacid dehalogenase-like hydrolase 142 303 - -
Glsi06g1309 496 SUPERFAMILY HAD-like 181 335 IPR036412 -
Glsi06g1309 496 Gene3D - 336 427 - -
Glsi06g1309 496 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 139 195 IPR023299 GO:0000166
Glsi06g1309 496 SUPERFAMILY Calcium ATPase, transduction domain A 3 51 IPR008250 -
Glsi06g1309 496 FunFam Plasma membrane ATPase 181 337 - -
Glsi06g1309 496 FunFam Membrane H(+)-ATPase1 129 189 - -
Glsi06g1309 496 Gene3D - 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1309 Glsi-ChrGlsi06 27492873 27501255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1309 378 481 Primary Pumps ATPases AT3G47950 35.758 2.02e-18 87.0