Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1302 ATGGCACGGTTCACGAGGTCCTCCACACATCGCCTCCTTTACACTCTGTACTCTTCCCCCACTAAGACGATGCCGTTGCCATCAACGTCGCCCGCCGCCTCTCTCCTCGTCGGCACTTTCCACCTCCGTCAGTTCTCAGCTGGTAACCTTGCGCGGGCTAAAGAGGATAAGGAGCCCTGGTGGAAGGAGTCGATGGAAAGGCTTCGCAACATTGGGATCTCGGCGCACATCGACTCCGGCAAGACGACGCTGACTGAAAGGGTTCTGTACTACACGGGGCGAATCCATGAGATTCATGAGGTTAGAGGTAGAGATGGGGTTGGTGCCAAGATGGATTCTATGGACTTGGAGAGGGAGAAGGGGATTACTATTCAGTCAGCTGCTACTTACTGCACTTGGAAAGACTATAAGATTAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTCCTTTGTAGTGTTGGGGGAGTGCAAAGTCAGTCTATTACTGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATCAACAAACTAGATCGAATGGGAGCAGATCCATGGAAAGTTTTGAATCAGGCAAGGTCTAAGCTTCGACATCATAGTGCTGCCATGCAAGTTCCAATAGGCTTGGAAGAAGACTTTAAGGGTCTCGTTGATCTTGTGCAGTTAAAGGCCTACTATTTTCATGGTTTAAATGGTGAAAAAGTTGTCACTGAAGAAGTTCCTGCAGATATGGAGGCCTTGGTAGCAGAAAAAAGACGTGAACTCATAGAAGTTGTGTCAGAAGTTGATGATAAACTTGCTGAAGCATTTCTTAGTGATGAGCCCATATCATCTGCTGATCTTGAGGAAGCAATTCGTAGGGCCACCGTAGCACGAAAATTTGTACCAGTATTCATGGGCAGTGCCTTCAAAAACAAGGGGGTACAGCCACTTCTGGATGGTGTGCTTAATTATTTGCCTTGTCCAGTTGAAGTTAGTAATTATGCCCTTGACCAGACAAAGAATGAGGAGAAGATTGCGCTGTCTGGAACTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATTTAAGAATCTACGAAGGTGTCATCCGGAAGGGTGAATTTATTATTAACGTAAACACTGGCAAGAGGATCAAGGTTCCTCGCTTGGTTCGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCTGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGATCAGTCAAATACACAATGACTTCTATGAATGTACCTGAGCCAGTTATGTCGTTAGCTGTGCAACCCGTTTCAAAAGACTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGCTTCCAGAAAGAGGATCCTACTTTCCGTGTTGGCTTGGACTCAGAAAGTGGGCAGACAATCATTTCCGGCATGGGGGAACTGCATTTGGATATCTATGTTGAACGCATTAGGAGAGAGTATAAGGTTGATGCTACTGTTGGAAAGCCTCGTGTAAACTTTAGAGAGACTGTTACTCAGCGTGCTGACTTTGATTATTTACATAAGAAGCAATCTGGAGGGCAGGGTCAATATGGTCGAGTAATTGGGTATATTGAATCACTTCCATCTGGGTCGCCAACTAAGTTTGAGTTTGAAAACTTGCTTGTTGGACAGGCTATACCATCAAATTTTATCCCCGCAATTGAGAAAGGTTTCAAAGAAGCCGCTAACTCGGGTTCGTTAATTGGACATCCAGTTGAAAATCTTCGGGTTGTCTTGACAGATGGTGCTTCTCATGCTGTTGATTCCAGTGAGCTTGCATTTAAGTTAGCTGCTATCTATGCTTTTAGACAGTGCTATGCTACTGCCAGACCGGTTATATTAGAACCTGTCATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACAAGAGAAAAGGTGTGATTGTTGGAAATGACCAGGAAGGAGATGACTCTGTTATTACTGCCCATGTCCCACTTAACAATATGTTTGGGTACTCCACATCACTACGTTCAATGACACAGGGCAAAGGGGAATTCACAATGGAGTACAAAGAGCATTCACCAGTTTCTCATGATGTACAGACGCAATTGGTAAACACCTATAAAAGCAAGGCAGCTGAATAA 2271 0.4487 MARFTRSSTHRLLYTLYSSPTKTMPLPSTSPAASLLVGTFHLRQFSAGNLARAKEDKEPWWKESMERLRNIGISAHIDSGKTTLTERVLYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAMQVPIGLEEDFKGLVDLVQLKAYYFHGLNGEKVVTEEVPADMEALVAEKRRELIEVVSEVDDKLAEAFLSDEPISSADLEEAIRRATVARKFVPVFMGSAFKNKGVQPLLDGVLNYLPCPVEVSNYALDQTKNEEKIALSGTPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGEFIINVNTGKRIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDSESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIESLPSGSPTKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVENLRVVLTDGASHAVDSSELAFKLAAIYAFRQCYATARPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLVNTYKSKAAE 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1302 756 FunFam Elongation factor G 465 541 - -
Glsi06g1302 756 CDD EFG_mtEFG1_IV 540 657 IPR005517 GO:0005525
Glsi06g1302 756 CDD EF-G 70 342 - -
Glsi06g1302 756 SMART EFG_C_a 659 746 IPR000640 -
Glsi06g1302 756 NCBIfam small GTP-binding protein domain 68 240 IPR005225 GO:0005525
Glsi06g1302 756 Gene3D - 663 733 - -
Glsi06g1302 756 Gene3D - 60 345 IPR027417 -
Glsi06g1302 756 SUPERFAMILY Ribosomal protein S5 domain 2-like 536 658 IPR020568 -
Glsi06g1302 756 PRINTS GTP-binding elongation factor signature 70 83 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 PRINTS GTP-binding elongation factor signature 155 166 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 PRINTS GTP-binding elongation factor signature 191 200 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 PRINTS GTP-binding elongation factor signature 119 127 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 PRINTS GTP-binding elongation factor signature 139 149 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 Gene3D - 542 746 IPR014721 -
Glsi06g1302 756 FunFam Elongation factor G 542 679 - -
Glsi06g1302 756 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 5 749 - -
Glsi06g1302 756 FunFam Elongation factor G, mitochondrial 351 464 - -
Glsi06g1302 756 Pfam Elongation Factor G, domain III 461 535 IPR041095 -
Glsi06g1302 756 SUPERFAMILY Translation proteins 307 459 IPR009000 -
Glsi06g1302 756 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 112 127 IPR031157 -
Glsi06g1302 756 SUPERFAMILY EF-G C-terminal domain-like 459 536 IPR035647 -
Glsi06g1302 756 CDD EFG_III 462 537 IPR009022 -
Glsi06g1302 756 Pfam Elongation factor Tu domain 2 382 448 IPR004161 GO:0005525
Glsi06g1302 756 Gene3D Elongation Factor G (Translational Gtpase), domain 3 468 541 - -
Glsi06g1302 756 Hamap Elongation factor G [fusA]. 64 750 IPR004540 GO:0003746|GO:0005525|GO:0006414
Glsi06g1302 756 Pfam Elongation factor G C-terminus 660 745 IPR000640 -
Glsi06g1302 756 Pfam Elongation factor Tu GTP binding domain 67 340 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 FunFam Elongation factor G 663 733 - -
Glsi06g1302 756 Gene3D Translation factors 350 467 - -
Glsi06g1302 756 Pfam Elongation factor G, domain IV 536 656 IPR005517 GO:0005525
Glsi06g1302 756 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 66 343 IPR000795 GO:0003924|GO:0005525
Glsi06g1302 756 SUPERFAMILY EF-G C-terminal domain-like 659 751 IPR035647 -
Glsi06g1302 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 340 IPR027417 -
Glsi06g1302 756 CDD mtEFG1_C 662 739 IPR035649 -
Glsi06g1302 756 SMART EFG_IV_2 537 657 IPR005517 GO:0005525
Glsi06g1302 756 FunFam Elongation factor G, mitochondrial 59 346 - -
Glsi06g1302 756 CDD mtEFG1_II_like 369 449 - -
Glsi06g1302 756 NCBIfam elongation factor G 64 750 IPR004540 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1302 Glsi-ChrGlsi06 26817375 26834456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1302 384 544 Eukaryotic Initiation Factors Gene Family AT3G22980 25.281 1.61e-08 56.2