Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1295 ATGTTGGACTACGAATGGGGCAACCCGTCCACTATGATACTCGCTGGAAACGAAGAAGCAGTCGCCGCCGCCGCCGCAGAAGAATCCGACCAAACTCACCGGCAAATCTTCGACCACTACGCCTCCCATGGCTTATTACCTGACCACTTCCTTTCTCAACCGCAACCGGGACCCGCACACACCACCACCGCTGATTTCTCTCTACACCACCCCCACCACCACCAACACTTTAACCCGCAACCCCACCACCACCATCATATCCACCACTCTCTCTTCGACCCAAACGCCTTCCCCAGCGCGTCTTCCCCCTCATTCCCTCCACCACAACCACCACAACCTCCATCCATGTTCACTTTTGACCCGCTCCCTGCCGTCAACGCCAGCAACTGCGGGCCTGGGCTTCTGCTTGTTCCCAAGTCCGAGGATGTCGGTCGGCCCATGGACTTCGCGGCTTCTCGAATTGGGCTTAACCTGGGTGGCCGTACGTACTTCTCCTCCGAGGACGACTTCGTGAGCCGCCTCTACCGCCGGTCCAGGCCGGCAGAACTGGGCACGATGACGTCGTCTAACAACTCGCCCAGGTGCCAAGCCGAGGGCTGCAATGCCGATCTCTCCCACGCCAAGCACTATCACCGTCGCCACAAGGTCTGCGAGTTTCACTCTAAGGCATCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGTAGCAGGTTCCATCTTCTTTCGGAGTTTGATAACGGAAAACGTAGCTGCAGGAAAAGACTGGCAGATCATAATCGTCGCAGAAGAAAAACTCAGCAGCCAACTCAAGAATCCCAGAAATCTCAGCTCGAAAATGCCGGCAATTCAACTTTGGAAAGTGTTGCAAAATCGCCGCCGGATTCCGGAGCTCAGTCATCTTCGTCAGTGACGGTAGCGGTGTCCCCACCAGATTATTTCCGGGAAAGGCCATATCAAAGTCGTACTAGTTCTTCAACAATAACAAGCTCACTGTTTTTCTCAAGTGGGTAG 1023 0.5552 MLDYEWGNPSTMILAGNEEAVAAAAAEESDQTHRQIFDHYASHGLLPDHFLSQPQPGPAHTTTADFSLHHPHHHQHFNPQPHHHHHIHHSLFDPNAFPSASSPSFPPPQPPQPPSMFTFDPLPAVNASNCGPGLLLVPKSEDVGRPMDFAASRIGLNLGGRTYFSSEDDFVSRLYRRSRPAELGTMTSSNNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQESQKSQLENAGNSTLESVAKSPPDSGAQSSSSVTVAVSPPDYFRERPYQSRTSSSTITSSLFFSSG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1295 340 MobiDBLite consensus disorder prediction 73 89 - -
Glsi06g1295 340 MobiDBLite consensus disorder prediction 100 118 - -
Glsi06g1295 340 ProSiteProfiles Zinc finger SBP-type profile. 192 269 IPR004333 GO:0003677
Glsi06g1295 340 MobiDBLite consensus disorder prediction 259 340 - -
Glsi06g1295 340 MobiDBLite consensus disorder prediction 273 311 - -
Glsi06g1295 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 325 IPR044817 GO:0003677
Glsi06g1295 340 SUPERFAMILY SBT domain 193 272 IPR036893 GO:0003677|GO:0005634
Glsi06g1295 340 FunFam Squamosa promoter-binding-like protein 14 186 256 - -
Glsi06g1295 340 MobiDBLite consensus disorder prediction 321 340 - -
Glsi06g1295 340 MobiDBLite consensus disorder prediction 53 122 - -
Glsi06g1295 340 Gene3D - 186 256 IPR036893 GO:0003677|GO:0005634
Glsi06g1295 340 Pfam SBP domain 195 268 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1295 Glsi-ChrGlsi06 25897828 25899696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1295 1 242 SBP-box Gene Family AT1G02065 47.638 1.13e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi06g1295 SBP 9.2e-31 No_clan