Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1278 ATGTTTGGGCGTGCACCTAGAAGGAGTGATAACAGCAAATTTTATGATATTCTTGGTGTTACAAAAAGTGCTAGTCAAGATGAGCTCAAAAAGGCCTATAAAAAGGCAGCAATCGTCAATCATCCAGATAAAGGTGGAGATCCTGAGAAGTTCAAGGAGTTAGCTCAAGCTTATGAGGTTCTCAGTGATCCTGAAAAGAGAGAACTGTATGATCAATATGGTGAAGATGCCCTTAAAGAAGGAATGGGGGGAGGTGGGGGTGGCCCATTTCATAGTCCATTTGATATATATGAATCGTTTTTTGGTGGGGCCTTTGGCGGTGGTAGTTCACGAGGTAGAAGGCAGAAACATGGTGAAGATGTGGTGCATACTTTGAAGGTTTCTTTGGAGGACCTGTATAATGGCACAACAAAGAAGCTATCTCTTTCTAGAAATATATTATGCACAAAATGTAAAGGGAAAGGTTCTAAAAGTGGGACAGCTGGGGCATGTTTTGGATGCCACGGTGCAGGAATGAAGATTACAAGAAGGCAGATTGGACTGGGTATGATTCAACAGATGCAACATGTCTGTTCTGATTGCAGAGGCACTGGTGAGGTCATTAGTGAGAGAGATAGATGTCCTCAATGCAAGGGAAACAAGGTCACCCAGAAAAAGAATGTGCTGGAGGTGAATGTTGAGAAAGGCATGCAGCGGGGTCAGAAGATCGTATTTGAAGGACAAGCTGATGAAGCTCCAGACACAATTACTGGAGACATTGTTCTTGTATTGCAAGTAAAGGAGCACCCTAAGTTCACCAGGAAGTATGATGACCTCTATGTTGAGCATAACCTCAGTTTGACTGAGGCACTTTGTGGGTTTCAGTTTGCCCTCACCCATCTTGATGGGAGGCAACTCTTGATCAAATCAAACCCTGGGGAAGTCATCAAGCCTGGTCAATTTAAAGCAATAAATGATGAGGGAATGCCACATCACAATAGGCCCTTCATGAAGGGCCAACTTTTTATCCAATTTAATGTCGGCTTCCCGGACTCCGGGTTCCTTTCCCCTAACCAGTGCCGGATGTTAGAAACAGTTTCTCCGAAGATGAACAAGAACTTGACTGATATGGAGTTTGATGATTGTGAGGAGACCACTTTGCATGATGTTAACATGGAGGAAGAGATGAGACGGAAGCAGCAACAACAATTCCATGAGGTATTTGATGAAGATGATGATGATGAGCAGCCATCCATGCCACGAGTGCAATGTGCTCAACAGTAA 1263 0.4378 MFGRAPRRSDNSKFYDILGVTKSASQDELKKAYKKAAIVNHPDKGGDPEKFKELAQAYEVLSDPEKRELYDQYGEDALKEGMGGGGGGPFHSPFDIYESFFGGAFGGGSSRGRRQKHGEDVVHTLKVSLEDLYNGTTKKLSLSRNILCTKCKGKGSKSGTAGACFGCHGAGMKITRRQIGLGMIQQMQHVCSDCRGTGEVISERDRCPQCKGNKVTQKKNVLEVNVEKGMQRGQKIVFEGQADEAPDTITGDIVLVLQVKEHPKFTRKYDDLYVEHNLSLTEALCGFQFALTHLDGRQLLIKSNPGEVIKPGQFKAINDEGMPHHNRPFMKGQLFIQFNVGFPDSGFLSPNQCRMLETVSPKMNKNLTDMEFDDCEETTLHDVNMEEEMRRKQQQQFHEVFDEDDDDEQPSMPRVQCAQQ 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1278 420 Gene3D - 263 344 - -
Glsi06g1278 420 CDD DnaJ 14 63 IPR001623 -
Glsi06g1278 420 Gene3D DnaJ domain 10 111 IPR036869 -
Glsi06g1278 420 Pfam DnaJ domain 14 71 IPR001623 -
Glsi06g1278 420 FunFam DnaJ subfamily A member 2 148 214 - -
Glsi06g1278 420 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Glsi06g1278 420 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Glsi06g1278 420 CDD DnaJ_C 119 345 - -
Glsi06g1278 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Glsi06g1278 420 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Glsi06g1278 420 FunFam Chaperone protein dnaJ 3 49 111 - -
Glsi06g1278 420 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 396 IPR044713 GO:0006457|GO:0030544
Glsi06g1278 420 SMART dnaj_3 12 66 IPR001623 -
Glsi06g1278 420 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Glsi06g1278 420 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Glsi06g1278 420 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 345 IPR008971 GO:0006457|GO:0051082
Glsi06g1278 420 MobiDBLite consensus disorder prediction 390 420 - -
Glsi06g1278 420 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Glsi06g1278 420 Gene3D - 148 214 - -
Glsi06g1278 420 FunFam DnaJ subfamily A member 2 262 344 - -
Glsi06g1278 420 SUPERFAMILY Chaperone J-domain 9 108 IPR036869 -
Glsi06g1278 420 Gene3D - 112 262 - -
Glsi06g1278 420 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Glsi06g1278 420 Hamap Chaperone protein DnaJ [dnaJ]. 10 383 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Glsi06g1278 420 PRINTS DnaJ domain signature 46 66 IPR001623 -
Glsi06g1278 420 PRINTS DnaJ domain signature 15 33 IPR001623 -
Glsi06g1278 420 PRINTS DnaJ domain signature 66 85 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1278 Glsi-ChrGlsi06 23850008 23859463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1278 8 73 C2H2 Transcription Factor Family AT1G74250 41.333 2.39e-10 60.5