Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1266 ATGCAGGGGAAAAAGGATCAGGAACCTATAAGAAAAGGGCCATGGAAAGCAGAGGAAGATGAGGTGCTTCTAAACCATGTCAACAAGTATGGCCCCAGAGACTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGGACCGGCAAGTCTTGCCGCCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGGTGCAAATTTTCACTAGAGGAAGAGAGGGTGGTGATAGAGTTGCAGGCACAATTCGGGAACAAATGGGCCAAGATTGCGTCTTATTTGCCAGGGAGAACAGACAACGATGTCAAGAATTTCTGGAGTAGCAGGCAAAAGAGGCTGGCTAGGATTCTGCAAACTTCAGCACCAGCCTCCAAATCCCAGAAGAACAAAATTAAAGTTCCCACTTTTCACGATGTCAACCCTCTGGAGGCTCCTAAGTTCAGTTCTTCATCAGAGGAAGAATTATCATTAAAGGCCCAGTCATGCTCGTCATCTTTCATTGAAAATTCAGAGGTCATCAAAATGGTGCCATTGCCAGATCTTATGAACTCCAGGCTGTTGAGTTCTGACACAAACCTGCAGATTAAGGAAGAGTTTACATCTTTTCAGAGCTATGGTAGCACTGACATAAGCTCACAAAACGTTTTCCCTCAGATTTTCCAACCCCAGACAGATCTCACATTCTCAATGGAAAGTCAAGACCTTTTGGCCAGAGCTGATGAGCCTAGTTTCATTGATGGCTTTGGCCCTTTGGATGCATCTGAACTTGGAATCGGAACACAAATTCCTATTGGGTTTCCTTTCTTCGAGCCATCAGGAAGTTGCAGAATTGGGACAAGGGATACAATAGATAACCCCACAAATCCTGACAACTTCTTCGATGACTTCCCAGCAGACATGTTTGATCATATGCAGCCACCTCCAAGCCCATCGGAGCTGTGA 945 0.4561 MQGKKDQEPIRKGPWKAEEDEVLLNHVNKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERVVIELQAQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARILQTSAPASKSQKNKIKVPTFHDVNPLEAPKFSSSSEEELSLKAQSCSSSFIENSEVIKMVPLPDLMNSRLLSSDTNLQIKEEFTSFQSYGSTDISSQNVFPQIFQPQTDLTFSMESQDLLARADEPSFIDGFGPLDASELGIGTQIPIGFPFFEPSGSCRIGTRDTIDNPTNPDNFFDDFPADMFDHMQPPPSPSEL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1266 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Glsi06g1266 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Glsi06g1266 314 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Glsi06g1266 314 FunFam Transcription factor GAMYB 67 136 - -
Glsi06g1266 314 Gene3D - 67 136 - -
Glsi06g1266 314 SMART sant 65 113 IPR001005 -
Glsi06g1266 314 SMART sant 11 61 IPR001005 -
Glsi06g1266 314 FunFam MYB transcription factor 12 64 - -
Glsi06g1266 314 CDD SANT 68 107 IPR001005 -
Glsi06g1266 314 CDD SANT 14 59 IPR001005 -
Glsi06g1266 314 Pfam Myb-like DNA-binding domain 15 73 - -
Glsi06g1266 314 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Glsi06g1266 314 Gene3D - 12 64 - -
Glsi06g1266 314 PANTHER TRANSCRIPTION FACTOR DUO1 4 313 - -
Glsi06g1266 314 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1266 Glsi-ChrGlsi06 22953473 22955351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1266 1 311 MYB Transcription Factor Family AT3G60460 51.393 2.39e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi06g1266 Myb_DNA-bind_6 3.3e-12 CL0123