Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1257 ATGCAACCCATAGTAGATCGAAACTCTGAGACAAGGTCGTTCGTCCGGGAAATAGATGTGAATTTAGCACCGTTGACGGTGGTGGATTGTGACGAGGAACATGGTGTTTCGTCGCCGAACAGTACAATATCAAGTATCAGCGGGAAGCGGAGCGAGAGAGAAACAAACGGAGACGAAAACGACGCCGAGAGGGCTTCGACCTCCCCCGTAAGCGAAGATGAGGACGGAGGCGGCATTGGCGGCGACCCTTCTAGGAAGAAGCTCAGGCTTTCAAAGGAACAAGCCATGGTGCTGGAGGAGACATTTAAGGAGCACAACACGCTTAATCCGAAACAAAAGCAGGCATTGGCTAAGCAGCTGAATCTGAGGGCTAGACAGGTTGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGTGAATACTTGAAGAGGTGCTGTGAGAATCTAACTGAGGAGAATAGGAGGCTGCAAAAAGAAGTGCAAGAGCTTAGGGCGTTGAAATTGTCCCCACAGCTCTACATGCACATGAACCCTCCCACTACTCTTACAATGTGCCCTTCATGTGAGCGTGTTGGCGTCTCATCTTCATCCTCTTCATCTGCCACAGCTCCCTCTGCCATTGCACCAACGATAGGCCCTAATATCCAGCGGCCGGTCCCTGTCAACCCTTGGGCGGCGATGTTGATCCAACAGCGGCGACCATAA 729 0.5144 MQPIVDRNSETRSFVREIDVNLAPLTVVDCDEEHGVSSPNSTISSISGKRSERETNGDENDAERASTSPVSEDEDGGGIGGDPSRKKLRLSKEQAMVLEETFKEHNTLNPKQKQALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVGVSSSSSSSATAPSAIAPTIGPNIQRPVPVNPWAAMLIQQRRP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1257 242 MobiDBLite consensus disorder prediction 35 50 - -
Glsi06g1257 242 MobiDBLite consensus disorder prediction 29 87 - -
Glsi06g1257 242 Pfam Homeodomain 85 139 IPR001356 GO:0003677
Glsi06g1257 242 CDD homeodomain 85 142 IPR001356 GO:0003677
Glsi06g1257 242 SMART HOX_1 83 145 IPR001356 GO:0003677
Glsi06g1257 242 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Glsi06g1257 242 SUPERFAMILY Homeodomain-like 68 142 IPR009057 -
Glsi06g1257 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 17 214 - -
Glsi06g1257 242 MobiDBLite consensus disorder prediction 202 222 - -
Glsi06g1257 242 Gene3D - 89 139 - -
Glsi06g1257 242 Coils Coil 147 177 - -
Glsi06g1257 242 MobiDBLite consensus disorder prediction 51 70 - -
Glsi06g1257 242 MobiDBLite consensus disorder prediction 202 217 - -
Glsi06g1257 242 Pfam HD-ZIP protein N terminus 5 54 IPR006712 GO:0005634
Glsi06g1257 242 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Glsi06g1257 242 SMART halz 141 184 IPR003106 GO:0006355|GO:0043565
Glsi06g1257 242 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Glsi06g1257 242 FunFam Homeobox-leucine zipper protein 18 67 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1257 Glsi-ChrGlsi06 22416078 22417812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1257 6 240 Homeobox Transcription Factor Family AT3G60390 69.600 2.66e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi06g1257 Homeodomain 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi07g2171 07 66984477 66993453 Glsi06g1257 06 22416078 22417812 CCT
Glsi06g1257 06 22416078 22417812 Glsi06g1257 06 22416078 22417812 ECH