Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1241 ATGAGTCGTAGGGTGAGGAGGAAAGTCGCAAGGAAAGGAAAATTGCCAAGTTACCATGAAATTCAAGATGAGGTTTTGGATTTAAACCGTGAACGTGTTGTTGATTGGAGGAGCTTACCTGATGATACAGTAATTCAGCTGTTTTCATGTCTGAGTTATCGTGACAGAGCAAGCTTATCATCAACTTGTAGGACGTGGAAGTTTCTTGGTAGCTCTCCGTGTTTATGGACTTCTCTTGATCTTCGCTCTCACAGGTTTGATGCCACCATGGCATCTTCACTTGCTCCAAGGTGTGTGCATCTTCATAAGCTTAGATTTCGTGGGGCAGAGTCTGCTGATGCGATAATTCATCTTCAAGCTAGGAATTTGCGTGAAATAAGTGGTGACTATTGCAGGAAGATTACTGATGCGACTCTTGCTGTGATTGTGGCTCGGCATGAGTTACTTGAGAGCCTTCAGCTTGGGCCAGATTTTTGTGAAAGAATCAGTAGTGATGCTATAAAAGCAATAGCTCATTGCTGTCCTAGATTAAAGAAACTTAGACTCTCAGGCATTAGGGATGTAAATTCTGATGCCATTAATGCCTTTGCTAAGCATTGTCCAAATTTGACTGATATCGGATTCATTGACTGTCTGAATGTTGATGAGCTAGCATTGGGAAATGTGTTATCAGTTTGTTTCCTTTCGGTTGCGGGGACATCAAGTATGAAATGGGGTGTGGTTTCTCATCTTTGGCATAAGCTGCCTAATCTTACTGGATTAGATGTTTCAAGAACTGATATTGGTCCATCTGCTGTTTCAAGATTGTTATCATCGCAGAGCTTGAAGGTTTTGTGTGCTCTGAATTGTCCTATCCTTGAAGAAGACACCAGCCTATCCGCAAGTAAATATAAAAATAAACTATTAATTGCCCTTTTTACTGATATTTTTAAAGGACTAGCTTCTTTATTTTTTGATGATACAAAGAAAGGAAAGAATGTGTTTTTGGACTGGAGGAATGTGAAGAACAATGATAAAGACCTAAATGAAATTATGATCTGGCTTGAATGGATCCTATCCCATACACTTCTGCGATCTGCAGAGAGCTCCCAACAGGGTCTGGATAATTTCTGGGTTGAGCAAGGTGGAGCACTCTTGCTTAGTCTAATGCAGAGTCCCCAAGAGGATGTACAGGAGAGGGCAGCCACAGGTCTTGCAACATTTGTTGTAATTGATGATGAAAATGCTAGCATAGATGGTAGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATACGCCTCCTTCTTGGCTTGGCGAAATCTTGGAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCCATTGCAAATTTGTCTGTCAATGCCAGTGTAGCAAAAGCTGTTGCAGAAGAGGGTGGGATTGATATTCTCGCTGGTTTGGCTAGGTCTATGAATAAGCTGGTGGCTGAGGAGGCTGCTGGAGGATTGTGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGGTGAGGCCGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTGGAACGTGCAGCTGGTGCATTGGCTAATTTGGCGGCTGATGACAAGTGTAGTACAGAAGTTGCACTTGCTGGTGGTGTACATGCCTTAGTGATGCTTGCTCGTAACTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAATTTGGCTGCTCATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAAGCAGGTGCTCTTGAGGCACTTGTTCAACTTACTCGTTCTCTCCATGAGGGTGTTAGGCAAGAAGCTGCTGGTGCGCTTTGGAATTTGTCATTTGATGATAGAAATCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAGGCTTTGGTTGCTCTTGCCCAGTCTTGTTCTAATGCCTCCCCTGGACTTCAAGAGAGGGCTGCTGGTGCTCTCTGGGGATTGTCAGTTTCTGAAGCGAATAGCATTGCCATTGGGCGAGAAGGAGGTGTTGCACCTTTGATTGCTCTGGCACGGTCTGATGCTGAGGATGTTCATGAAACTGCTGCAGGAGCACTCTGGAATCTTGCATTTAACCCTGGTAATGCTCTACGTATTGTAGAGGAAGGAGGAGTTTCTGCACTTGTCGATCTCTGTTCTTCATCTTTATCAAAGATGGCACGCTTCATGGCTGCATTGGCATTGGCTTACATGTTTGATGGGAGAATGGATGAATTTGCTTTGGTAGGCACCTCATCAGAAAGCATCTCTAAGAGTGTGAGCTTGGATGGAGCTAGAAGAATGGCTTTGAAACACATAGAAGCTTTCATCCTTATGTTTTCTGATCCACAAGCATTTTCTGTTGCTGCTGCATCATCAGCTCCTGCAGCATTGGCTCAAGTTACTGAAGGTGCTCGAATTCAAGAAGCAGGACATCTTCGATGCAGTGGTTCTGAAATTGGAAGATTTGTTGCTATGCTACGAAACCCTTCATCTATACTAAAAGCTTGTGCTGCATTCGCCCTTCTCCAGTTTACAATTCCTGGTGGACGACACGCTATGCACCATGCTAGCCTCATGCAGAATGCAGGTGCAGCAAGAGTTCTTCGCGGGGCGGCCGCCTCTGCAACCGCCCCACTAGAAGCAAAAATATTTGCCAGAATTGTTCTTCGCAACCTGGAGTATCACCAGCTAGAGCAAACAGTCTAG 2742 0.4497 MSRRVRRKVARKGKLPSYHEIQDEVLDLNRERVVDWRSLPDDTVIQLFSCLSYRDRASLSSTCRTWKFLGSSPCLWTSLDLRSHRFDATMASSLAPRCVHLHKLRFRGAESADAIIHLQARNLREISGDYCRKITDATLAVIVARHELLESLQLGPDFCERISSDAIKAIAHCCPRLKKLRLSGIRDVNSDAINAFAKHCPNLTDIGFIDCLNVDELALGNVLSVCFLSVAGTSSMKWGVVSHLWHKLPNLTGLDVSRTDIGPSAVSRLLSSQSLKVLCALNCPILEEDTSLSASKYKNKLLIALFTDIFKGLASLFFDDTKKGKNVFLDWRNVKNNDKDLNEIMIWLEWILSHTLLRSAESSQQGLDNFWVEQGGALLLSLMQSPQEDVQERAATGLATFVVIDDENASIDGRRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNASVAKAVAEEGGIDILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIGEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSLHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSDAEDVHETAAGALWNLAFNPGNALRIVEEGGVSALVDLCSSSLSKMARFMAALALAYMFDGRMDEFALVGTSSESISKSVSLDGARRMALKHIEAFILMFSDPQAFSVAAASSAPAALAQVTEGARIQEAGHLRCSGSEIGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNAGAARVLRGAAASATAPLEAKIFARIVLRNLEYHQLEQTV 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1241 913 SUPERFAMILY ARM repeat 521 733 IPR016024 -
Glsi06g1241 913 PANTHER PROTEIN ARABIDILLO 1 1 910 - -
Glsi06g1241 913 SMART fbox_2 39 79 IPR001810 GO:0005515
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Glsi06g1241 913 ProSiteProfiles F-box domain profile. 33 79 IPR001810 GO:0005515
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 550 IPR000225 GO:0005515
Glsi06g1241 913 Gene3D - 498 584 IPR011989 -
Glsi06g1241 913 Gene3D - 585 673 IPR011989 -
Glsi06g1241 913 SMART LRR_CC_2 174 199 IPR006553 -
Glsi06g1241 913 SMART LRR_CC_2 120 145 IPR006553 -
Glsi06g1241 913 SMART LRR_CC_2 200 225 IPR006553 -
Glsi06g1241 913 SMART LRR_CC_2 248 272 IPR006553 -
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 636 681 IPR000225 GO:0005515
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 580 IPR000225 GO:0005515
Glsi06g1241 913 SUPERFAMILY RNI-like 35 289 - -
Glsi06g1241 913 Gene3D Ribonuclease Inhibitor 29 315 IPR032675 -
Glsi06g1241 913 Gene3D - 377 497 IPR011989 -
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Glsi06g1241 913 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 494 537 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 710 751 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 538 579 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 584 624 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 412 452 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 669 709 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 625 668 IPR000225 GO:0005515
Glsi06g1241 913 SMART arm_5 453 493 IPR000225 GO:0005515
Glsi06g1241 913 FunFam Protein ARABIDILLO 2 350 497 - -
Glsi06g1241 913 Pfam F-box-like 36 82 IPR001810 GO:0005515
Glsi06g1241 913 Gene3D - 674 912 IPR011989 -
Glsi06g1241 913 CDD F-box_AtADLO1-like 35 76 - -
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 548 579 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 495 537 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 587 623 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 458 492 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 625 667 IPR000225 GO:0005515
Glsi06g1241 913 Pfam Armadillo/beta-catenin-like repeat 417 451 IPR000225 GO:0005515
Glsi06g1241 913 SUPERFAMILY ARM repeat 360 584 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1241 Glsi-ChrGlsi06 21672060 21710154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1241 566 753 U-box Gene Family AT2G23140 35.979 4.82e-20 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1241 06 21672060 21710154 Glsi06g1241 06 21672060 21710154 ECH