Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1233 ATGGACTTTGGAGGCAACATGTTCTGTTTAAGTAATGGGGACACAGAGCAAAATGGTAATAGTAACAGTACTAGTTTTGCTTGGGATTCATGGGAGCCCACTAATTCTACCCATTCTAGCCATATTAACAGTTTTTACACTACCGCCGCCGCTGCGGCGGAGACTACCACCCCCAATCGCCAGGAAGCAAGTCTAGCAAACGCGGTTATGTTTCTTCCTCAAGCTAGTGCTAGTGATCATCATCATGACGACGGTGGGGTACACCACCATCAGCAGCCACTGTACACCGGGGATGGGTCCCATGTGCACCTTGACCCACATCTCATGTGCTTGAAACTAGGGAAGAGGCATTACTTTGAGGACGCTAATGCCCCTCCTCTGGGTGGTAGTACTGGTGGGCATGGGGGCTTCACTTTGGCCGCGGGTAAGAGAGGTAAAGGCCACTATGGAAGCAGTACCAGTGGTTGTGGTGGTGCTTCTGCTGGTAGTGTAAAGGCGGCGGCGACGGTGCCGAGATGTCAGGTGGAGGGGTGCCATTTGGCGCTGTTGAACGCCAAGGATTACCACCGGAGGCATAAAGTGTGTGAGATGCATTCCAAGGCATCCAAAGTTGTGGTCTTAGGATTGGAGCAGAGATTCTGCCAGCAGTGTAGCAGGTTTCATCCGGTGTCGGAGTTCGATGATTCAAAGAGAAGTTGTAGGAGAAGACTGGCTGGGCACAATGAGCGAAGGAGAAAGAGCTTCCACGATTCTGTGGGTAGGAATTCCTCTCAAGATAATAAGTTGATGGTTGGAGGGTTTCCATACTTATCGTCATCGTCATTGTCATCTTCGTCAGGGTGTGCTCACTCTCTTCTGTCATCTAAGAGCAATTCCTGGCTTTCTCCTTCTGATCTCTCCACAAGATGTAGTGCTGCACTACGAGAACTCATAGCTGAAAATCGAGCAGCAATCATGGCTAAGCAGATCAATTTAGATAGAGACTGGCACTTACAACACTATCAAGCAGTGGATGAAGAAGAGCTTAAGGATATTCAACCTCAATCCAATTACTTCCTACAGCAACAGCAAATGTTTCCCTAG 1083 0.4894 MDFGGNMFCLSNGDTEQNGNSNSTSFAWDSWEPTNSTHSSHINSFYTTAAAAAETTTPNRQEASLANAVMFLPQASASDHHHDDGGVHHHQQPLYTGDGSHVHLDPHLMCLKLGKRHYFEDANAPPLGGSTGGHGGFTLAAGKRGKGHYGSSTSGCGGASAGSVKAAATVPRCQVEGCHLALLNAKDYHRRHKVCEMHSKASKVVVLGLEQRFCQQCSRFHPVSEFDDSKRSCRRRLAGHNERRRKSFHDSVGRNSSQDNKLMVGGFPYLSSSSLSSSSGCAHSLLSSKSNSWLSPSDLSTRCSAALRELIAENRAAIMAKQINLDRDWHLQHYQAVDEEELKDIQPQSNYFLQQQQMFP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1233 360 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Glsi06g1233 360 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Glsi06g1233 360 MobiDBLite consensus disorder prediction 238 259 - -
Glsi06g1233 360 Pfam SBP domain 173 246 IPR004333 GO:0003677
Glsi06g1233 360 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Glsi06g1233 360 SUPERFAMILY SBT domain 171 251 IPR036893 GO:0003677|GO:0005634
Glsi06g1233 360 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 288 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1233 Glsi-ChrGlsi06 21310145 21313399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1233 109 246 SBP-box Gene Family AT1G27370 51.064 3.87e-37 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi06g1233 SBP 7.4e-32 No_clan