Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1230 ATGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGGATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTTTCCTTTCCTATCAGCGAGTTCCAATGATAAGCCACTGGCGGAGAAAGCTCTTCGAGCTCCCCTTCATTCGTTGCTAAGCCAAGGTTCCCCTTCTCCTCTTGCTCCTGCTGGTAGCTGTCGTTTTGACAGTTCCTTAGGTGCCCTGACAAAAAAGTTCATCACTTTGCTCAAGCATGCAGAGAATGGTATTCTCGACTTGAATAAAGCGGCACAAACTTTGGAGGTGCAAAAGAGGAGAATATATGACATAACTAATGTCTTGGAAGGCATTGGTCTAATTGAGAAAAAGCTAAAGAACAGAATACATTGGAAGGGATTTGATTCTTCAATGTCTGAGGAGATGGATGGTGATGTCTCTACGCTAAAGAATGAAACTCTGATAGCAATTAAAGCTCCACATGGAACTACCCTAGAAGTCCCTCATCCTGAGGAAGTTGTTGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTATCTTGTCAGTCATCACATCTTTCTGATGAATGATACAGATTATTGGCTTCTATCGGATGCTGAAGTTAGCATTACAGATATGTGGAAAACAGATTGTATCCCTGATTTTGAATACCTTCGTGCCTTTCTAAACACAGCTAGTGTTAATTGGAATGGGGCGGACATGCTTCATCCTGATTTTGGGATCATCTCAAGGCCACAAACTCCATCACCTAAGTTTGTTGAAGCGCCATCGACAGTGGATACCATGGATCTGCTTCAATATTTTGATAACCTTATGAATGCTGAGGATGTTTGTCAAGAGATATTGAATGTCAAGCCGGGGATTATTGCAATGAAATTGGTTAAGCGCATTACCCTGAGGATGATTGAAGATCTCACCAAAAGAGGTCAATTGCGGGGATTAATGAAGGGGCGAGCTCTTAACGCAATATGA 1041 0.4236 MTHPLLHLARDDKERASSIDEQRIDGALGIALFFFPFLSASSNDKPLAEKALRAPLHSLLSQGSPSPLAPAGSCRFDSSLGALTKKFITLLKHAENGILDLNKAAQTLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGFDSSMSEEMDGDVSTLKNETLIAIKAPHGTTLEVPHPEEVVDYPQRRYRIILRSTMGPIDVYLVSHHIFLMNDTDYWLLSDAEVSITDMWKTDCIPDFEYLRAFLNTASVNWNGADMLHPDFGIISRPQTPSPKFVEAPSTVDTMDLLQYFDNLMNAEDVCQEILNVKPGIIAMKLVKRITLRMIEDLTKRGQLRGLMKGRALNAI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1230 346 SUPERFAMILY E2F-DP heterodimerization region 152 206 IPR037241 -
Glsi06g1230 346 Coils Coil 91 111 - -
Glsi06g1230 346 Gene3D - 69 142 IPR036388 -
Glsi06g1230 346 PANTHER TRANSCRIPTION FACTOR E2F 155 205 IPR015633 GO:0000978|GO:0006357
Glsi06g1230 346 Pfam E2F/DP family winged-helix DNA-binding domain 77 140 IPR003316 GO:0005667|GO:0006355
Glsi06g1230 346 SMART E2F_TDP_2 75 140 IPR003316 GO:0005667|GO:0006355
Glsi06g1230 346 FunFam E2F transcription factor 1 69 142 - -
Glsi06g1230 346 Pfam E2F transcription factor CC-MB domain 154 205 IPR032198 GO:0046983
Glsi06g1230 346 SUPERFAMILY "Winged helix" DNA-binding domain 75 138 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1230 Glsi-ChrGlsi06 20916062 20921566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1230 212 247 E2F-DP Transcription Factor Family AT2G36010 52.778 6.26e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi06g1230 E2F_CC-MB 1.1e-15 No_clan