Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1217 ATGCGATCGGGAGGCTTTCCGTGGTGGTGGAACTGGTTGGAACGACAATTGCCCACAACAAATGCACAAGAAAGCCAGGTGTTGAAGAATTTTCAACTTACACCGCCTAGACCCTATTCAGAACAGAAGACTAGTCCACGACCCACCTCAAGCACCCATAAGCAGCATCATTTTGGGTTTGATAACATGGACACAACCACGCCAAAATCCACTAAATCAGCTATGCTGGCATTTGCAAAACCGGCAAGAACCCCACAAGCAAAAAGCTCAAACTTCCCAAAATATTCAAGAGCAAGGATGGGGGGAGGTGATCTACCTTTTGATGTACCACTGAAGGATGAAGATAGCCTCACAAGCTGCCCACCATTTTCAGTACCAAACTACATGGCTCCAACGGTTTCTGCCAAGGCCAAAGTCCGTGGTAGTAGTAATCCAAGAGAAAGTTTTACTGGGACTCCAAGCAGTGAATCAAAGAGGCGACTTTCATTTCGGTGCAACATTCATCACTCTCGACTAGTCTCTGCGAGGCGTCGTGTCGGCGTGAGCAAGGAACCCACCATGAGAGAACACACAGCGTCCATGTTCTGCACCGAATCCCAACAAATTTATCCAGCCTACACCACTGTTTATGTTGGCAACATTCCCCATGATGTAACACAAGCTGAACTCCACTGTCAGTTCCATGCACTGGGGGCTGGGGTTAGTGAGAAAGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCATGAAGAAGCAGCCTTGGCCATTCAGATGGCTAATGGAAGAATAATTCGTGGGTTTCAACTGATTGATGCACAAGATCTTATGGTTTACTGCAATCTTGCTTTCCATTCATTGGAGCTCATGCTTATGGTGTGGGAAAATGAAACAAGTTAG 912 0.4616 MRSGGFPWWWNWLERQLPTTNAQESQVLKNFQLTPPRPYSEQKTSPRPTSSTHKQHHFGFDNMDTTTPKSTKSAMLAFAKPARTPQAKSSNFPKYSRARMGGGDLPFDVPLKDEDSLTSCPPFSVPNYMAPTVSAKAKVRGSSNPRESFTGTPSSESKRRLSFRCNIHHSRLVSARRRVGVSKEPTMREHTASMFCTESQQIYPAYTTVYVGNIPHDVTQAELHCQFHALGAGVSEKVRVQRDKGFGFVRYNTHEEAALAIQMANGRIIRGFQLIDAQDLMVYCNLAFHSLELMLMVWENETS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1217 303 Gene3D - 186 279 IPR012677 -
Glsi06g1217 303 SMART rrm1_1 208 278 IPR000504 GO:0003723
Glsi06g1217 303 MobiDBLite consensus disorder prediction 31 66 - -
Glsi06g1217 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 274 IPR000504 GO:0003723
Glsi06g1217 303 MobiDBLite consensus disorder prediction 137 157 - -
Glsi06g1217 303 PANTHER OS02G0815200 PROTEIN 116 271 - -
Glsi06g1217 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 274 IPR000504 GO:0003723
Glsi06g1217 303 SUPERFAMILY RNA-binding domain, RBD 199 274 IPR035979 GO:0003676
Glsi06g1217 303 Pfam Protein of unknown function (DUF4005) 106 174 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1217 Glsi-ChrGlsi06 20196439 20198897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1217 1 163 IQD Protein Family AT3G59690 50.303 2.08e-35 132