Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1215 ATGCCAAGCCCAGAAGTTATAACATGCAAAGCTGCAGTATGCTGGGGAGCAGGAGAGAAGCATTTGAAGGTGGAAGAGATACAAGTAGACCCACCAAAACCAACCGAAGTTCGTGTTAAGATGCTTTGTGCCAGTGTCTGTCACACTGACCTCTCGAGGGCTAGAGGACTTAAATATGCTCTTTTTCCTCGAGTTTTAGGGCATGAAGGAGTGGGTGTTGTTGAGAGCATTGGGGAAAAAGTAACAAATCTGAAAGTAGGGGATGTTGTGATTCCAACGTACATTGGTGAGTGCCAAGAATGTGAGAACTGCATTTCAAAGAAATCCAACTTGTGCCTTAAATACCCTATAACGTTAAATGGCCTAATGCTTGATAACACTTCAAGGATGTCCATCAGAGGACAGATATTATACCAACTTTTTAGTTGCGCAACATGGTCTGAATATATGGTTATTGAAGCCAACTACCTTCTCAAAGTTGATCCAAACATTGACCTAGCCCATGCTAGCCTCATCTCATGTGGGTTCACAAGTGGTTTTGGGGCTGCTTGGAAGAAAGCCAAAGTTGAAAGTGGATCATCCGTGGCCGTTTTTGGTCTTGGGTCTGTTGGAATTGGGGCCATAAGCGCAGCCAAAATGATGGGGGCAACTAAGATAATTGGGATTGACAAAAATGCACTGAAGAAAGAAAAGGGAGAAGCTTTTGGAATGACTGATTTTATTAATCCTGGTGAATCAGATAAATCAACTTCAGAATTGGTCAAGGAGCTGAGTGGTGGAATCGGTGTGGACTATTCATTTGAGTGCACTGGTGTTGCCCCCTTGCTTACTCAAGCCCTCGAAGCCACAAAACTGGGGAAAGGAAAAACAATAGCAATTGGCGAAGTACCTGAAGACTTTGTGCAGATAAATTTTCTTGCCCTTATGCTTGGGAGAACTTTAAAAGGTTCCATTTTTGGGGGACTAAAAGCCAAATCTGACCTTTCTATCTTAGTAGACAAATGCCTGAAAAAGGAAATCCCTCTTGATGAACTTGTGACTCATGAGGTCTCGTTAACAGATATAAACAAAGCATTTGAGCTATTGAAACAACCAGATTGCGTCAAAGTTCTCATCAGGATATGA 1125 0.424 MPSPEVITCKAAVCWGAGEKHLKVEEIQVDPPKPTEVRVKMLCASVCHTDLSRARGLKYALFPRVLGHEGVGVVESIGEKVTNLKVGDVVIPTYIGECQECENCISKKSNLCLKYPITLNGLMLDNTSRMSIRGQILYQLFSCATWSEYMVIEANYLLKVDPNIDLAHASLISCGFTSGFGAAWKKAKVESGSSVAVFGLGSVGIGAISAAKMMGATKIIGIDKNALKKEKGEAFGMTDFINPGESDKSTSELVKELSGGIGVDYSFECTGVAPLLTQALEATKLGKGKTIAIGEVPEDFVQINFLALMLGRTLKGSIFGGLKAKSDLSILVDKCLKKEIPLDELVTHEVSLTDINKAFELLKQPDCVKVLIRI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1215 374 Gene3D - 179 317 - -
Glsi06g1215 374 Gene3D - 12 369 - -
Glsi06g1215 374 Pfam Zinc-binding dehydrogenase 203 322 IPR013149 -
Glsi06g1215 374 SMART PKS_ER_names_mod 18 372 IPR020843 GO:0016491
Glsi06g1215 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Glsi06g1215 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Glsi06g1215 374 FunFam Alcohol dehydrogenase 6 12 194 - -
Glsi06g1215 374 SUPERFAMILY GroES-like 325 372 IPR011032 -
Glsi06g1215 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 336 IPR036291 -
Glsi06g1215 374 CDD liver_alcohol_DH_like 7 373 - -
Glsi06g1215 374 PANTHER ALCOHOL DEHYDROGENASE 5 366 - -
Glsi06g1215 374 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
Glsi06g1215 374 SUPERFAMILY GroES-like 5 190 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1215 Glsi-ChrGlsi06 20155613 20159008 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1215 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.893 6.08e-20 88.6