Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1214 ATGGCTCCTCAGGTCGTAAAATTGTCTGAACTCACCATCGTGACTCCCCTTTCGGAGGCAGTACTGTTTGACCTTGCTTCACCTTCAGAGTTCAAAGTTCAAGTCATCATGTCTTCTCAAGGGCATGGTCTCCAGGCCTCCAATGTTATCCACTTTTTCAAGAGGATTCCTAAGAGTTTCGTGACGAAATGTGGGAAAGAATTGTCAAACCCCGTACTGCTGAGGCTTCCAAATGGTGCTGAATGGGAAGTAAATTGGGTCAAACGTGATGGTGATGTTTGGTTTCAAAATGGTTGGAAAAACTTTGCAGAATACTATTCTCTAGCTCATGGGCATTTCTTAGTTTTTAGATATGAAGGAAGATCTCAATTTCATGTTCTCATATTTGACATGAGTGCCTCAGAAATAGACTATTCTGGCATAAGAGGCACAAATGAAGATGAAGAGGTCAAACTCGATCAAGAAAGTGATGAGAGTAATGATTCTGTTGAAATATTATATGAGAGTGAAAGACCAAGATCTCCTTTTCACAATCCTCTACCCCATAAGAAGACGAAAACCATGCCTAATGGAGCACCTAAAGGCTATTCCAACCCATATGTTGAAACTAGAGGCACCAGATTTCAGAGGGCAAAACATTATGAGAATAGAAAAATCAATGAGGGTTCTGTTATCACAGAGCCAAAAACCAGAGGGTGTAGTGGAGGATGCTTATTCAAAACTAGGAAATGCTCAAAATCTGAGGATATTAAAGGGAATTTGCCATTGGAAGATATTGAAAGTAGCAGAACATTAGAGAGAGCCAGATTATTCCAGTCAGAGAATCCCTTTATCATACGTAGAATGCATCCATCATATGTTCATAGAAATTTAATGGGGAAGCAGGGGATCGCAACCATTAGAGTTTCTGGGGCGAGAACTTGGCCTGTTAAGTACAAGTTCAATAATTCCTCTAACCGAACTATACTTAGCACTGGTTGGGGTTCATTTGTCGAGGAAAATCATTTACAAGAAGGCGATGTTTGTGTATTTGAGATGGTTGGGTGCACACAAGTTTCATTCAAAATTGTTATTTTCCGAGCCAGTGAAGAACCAAGCTCTTGCACTTTGCAAGAAACAAAAAGCAATGAGGGGAGATCTGGGAGCTTCCTGAAAACTGAAGTTCATCCCAGTATTTGCTAA 1182 0.4044 MAPQVVKLSELTIVTPLSEAVLFDLASPSEFKVQVIMSSQGHGLQASNVIHFFKRIPKSFVTKCGKELSNPVLLRLPNGAEWEVNWVKRDGDVWFQNGWKNFAEYYSLAHGHFLVFRYEGRSQFHVLIFDMSASEIDYSGIRGTNEDEEVKLDQESDESNDSVEILYESERPRSPFHNPLPHKKTKTMPNGAPKGYSNPYVETRGTRFQRAKHYENRKINEGSVITEPKTRGCSGGCLFKTRKCSKSEDIKGNLPLEDIESSRTLERARLFQSENPFIIRRMHPSYVHRNLMGKQGIATIRVSGARTWPVKYKFNNSSNRTILSTGWGSFVEENHLQEGDVCVFEMVGCTQVSFKIVIFRASEEPSSCTLQETKSNEGRSGSFLKTEVHPSIC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1214 393 SUPERFAMILY DNA-binding pseudobarrel domain 272 364 IPR015300 -
Glsi06g1214 393 Gene3D - 30 133 IPR015300 -
Glsi06g1214 393 MobiDBLite consensus disorder prediction 370 393 - -
Glsi06g1214 393 MobiDBLite consensus disorder prediction 167 201 - -
Glsi06g1214 393 SUPERFAMILY DNA-binding pseudobarrel domain 45 132 IPR015300 -
Glsi06g1214 393 Gene3D - 257 364 IPR015300 -
Glsi06g1214 393 CDD B3_DNA 44 130 IPR003340 GO:0003677
Glsi06g1214 393 Pfam B3 DNA binding domain 287 361 IPR003340 GO:0003677
Glsi06g1214 393 Pfam B3 DNA binding domain 48 130 IPR003340 GO:0003677
Glsi06g1214 393 CDD B3_DNA 284 360 IPR003340 GO:0003677
Glsi06g1214 393 PANTHER B3 DOMAIN-CONTAINING 48 351 - -
Glsi06g1214 393 ProSiteProfiles B3 DNA-binding domain profile. 56 132 IPR003340 GO:0003677
Glsi06g1214 393 ProSiteProfiles B3 DNA-binding domain profile. 306 362 IPR003340 GO:0003677
Glsi06g1214 393 SMART B3_2 44 132 IPR003340 GO:0003677
Glsi06g1214 393 SMART B3_2 271 362 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1214 Glsi-ChrGlsi06 20150760 20154826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1214 55 363 B3 DNA Binding Superfamily AT3G18990 30.347 3.27e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi06g1214 B3 8.6e-17 CL0405