Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1210 ATGAACCAGTGTGTTCCCAGCTGGGATGTGGATGAAAATCCCACAGCCCCCAGAGTCCCTCTTCGTTCAAACTCAAATTCCACTGCTCCTGATGTTCCCATGTTAGACTATGAAGTTGCAGAGCTGACATGGGAGAATGGGCAGCTATCCTTGCATGGCCTAGGTCTGCCGCGAGTACCCACGAAACCTACCGCCGCCGCTGCCCCCCCTTCCAAGTACACATGGGAAAAGCCTCGTGGAAGTGGCACGTTGGAGTCCATAGTAAATCAAGCCACTCGGTTGCCCCACCGCAGCAAATCCATGTTCGACGGTGTCGTCGTCGGCGGCAGCGGCGGCGAGGGAGATGAGTTAGTGCCGTGGTTTGACCCCCAGAGAGCGGCGTCAAACACGATGACCATGGACGCCATGGTGCCTTGCTCGAATCGTACGGACGAGCAGAGCACGCAGATTATGGACTCTATTCCTGGAGGGCTTGGCACGTGCATGGGGGGTTGTTCGACACGGGTGGGGTCTTGTAGGGGTGGCCCAGCCACGCAGGAGGACGAGGTTCTCTTGGCTGCGAAACGCGCGAGGGTGACGCGTGTGCCGGTAGCTCACGAGTGGAGTAGCAGGGATCGCAGTGTGAGTGGTGGTAGTGCTACGTTTGGAAGAGATAGCCAGCACGTGACCTTCGACACGTGCGACAGGGAATTGGGAGTGGGTTTCACTTCCACCTCAATGGGTTCGCCGGAAAACACCAGCTCTGCCAAACAATGCACCAAGACCACCGCCGCCGACGACCATGACTCTGTTTGCCACAGTACACCACAGAGAGAAGCAGGTGATGAGGAGGACAAAAAGAAAGGAACTGGGAAATCCTCAGTGTCCCCTAAAAGGAGCAGGGCTGCAGCCATACACAATCAATCTGAAAGGAAAAGGAGAGATAAGATAAACCAAAGGATGAAGACATTGCAAAAGCTGGTCCCAAATTCCAGCAAGACTGATAAGGCTTCAATGCTGGATGAGGTGATAGAATATCTGAAGCAGTTGCAGGCACAAGTACAAATGATGAATAGAATGAGCATGTCTTCCATGATGCTGCCAATGACCATGCAACAACAGCTTCAAATGTCTATGATGGCTCCGATGGGCATGGGGATGGGTTTGGGAATGGGCATGGGTATGGGTATGGACATGAACACCATTGGCCGTGCTAACATTGCCGGAATCCCTCCTATCCTCCATCCTTCTGCTTTTATGCCTATGGCCTCATGGGATGCTTCTGCCGCCAACGACCGACTGCAAGGGGCTCCGCCCACGGTGATGCCTGATCCCTTGTCCACTTTTCTAGCGTGCCAGTCACAGCCCATGACCATGGATGCATACAGTAGAATGGCTGCCATGTATCAGCAGCTCCAGCAACCTCCAGCTTCTAATTCCAAGAGCTGA 1428 0.5406 MNQCVPSWDVDENPTAPRVPLRSNSNSTAPDVPMLDYEVAELTWENGQLSLHGLGLPRVPTKPTAAAAPPSKYTWEKPRGSGTLESIVNQATRLPHRSKSMFDGVVVGGSGGEGDELVPWFDPQRAASNTMTMDAMVPCSNRTDEQSTQIMDSIPGGLGTCMGGCSTRVGSCRGGPATQEDEVLLAAKRARVTRVPVAHEWSSRDRSVSGGSATFGRDSQHVTFDTCDRELGVGFTSTSMGSPENTSSAKQCTKTTAADDHDSVCHSTPQREAGDEEDKKKGTGKSSVSPKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRMSMSSMMLPMTMQQQLQMSMMAPMGMGMGLGMGMGMGMDMNTIGRANIAGIPPILHPSAFMPMASWDASAANDRLQGAPPTVMPDPLSTFLACQSQPMTMDAYSRMAAMYQQLQQPPASNSKS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1210 475 MobiDBLite consensus disorder prediction 297 312 - -
Glsi06g1210 475 Pfam Helix-loop-helix DNA-binding domain 299 344 IPR011598 GO:0046983
Glsi06g1210 475 CDD bHLH_AtPIF_like 294 348 IPR047265 -
Glsi06g1210 475 MobiDBLite consensus disorder prediction 255 285 - -
Glsi06g1210 475 Coils Coil 300 320 - -
Glsi06g1210 475 MobiDBLite consensus disorder prediction 1 31 - -
Glsi06g1210 475 MobiDBLite consensus disorder prediction 235 312 - -
Glsi06g1210 475 Gene3D - 289 355 IPR036638 GO:0046983
Glsi06g1210 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 294 343 IPR011598 GO:0046983
Glsi06g1210 475 Coils Coil 333 353 - -
Glsi06g1210 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 354 IPR036638 GO:0046983
Glsi06g1210 475 MobiDBLite consensus disorder prediction 235 254 - -
Glsi06g1210 475 SMART finulus 300 349 IPR011598 GO:0046983
Glsi06g1210 475 FunFam transcription factor UNE10 isoform X1 289 354 - -
Glsi06g1210 475 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 474 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1210 Glsi-ChrGlsi06 20007475 20012528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1210 1 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 52.248 2.22e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi06g1210 HLH 7.3e-14 No_clan