Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1203 ATGGCTCCTACTCTTCAACATGCATTCTTTTATTTACACTCCCTTGTAGCTTTCTTCATTTTTCTAGCAACCCCTTCCTTTTGCTTCAACCCCAGGAAGCTACTTAACTCTTCATACTCCCCATCTGGTTCAGATTGGAAACCAGCTGAGGCCACCTGGTATGGAAGCCCCACCGGTGCTGGAAGTGATGGGGGTGCTTGTGGATATGGGAGCGCCGTGGAGCAACCTCCATTCTCTTCAATGATATCAGCTGGAGGCCCTCCTTTGTATGAGTCAGGCAAAGGCTGTGGTGCTTGTTATGAGGTGAAGTGCACTGGAAATCCGGCATGTTCGGGTAACCCCGTGAAGGTAGTGATCACCGATGAGTGCCCTGGCTGTGGCTCAGCCCAGACAGTTCACTTTGACTTGAGTGGCAGCGCATTCGGTGCCATGGCAGTTTCAGGTCAGGCTCAGCAGCTACGCAATGCTGGGATATTGCAGATTCAACACAGACGGGTCGAATGCAACTACCGTGGCATGTCAATAGCATTCCACGTGGACACAGGCTCCAACTCTAACTATTTCGCATCCCTAATCGAATACGAGGATGGAGACGGTGACCTAGCCAAGGTTGAGCTGAAGCATTCAATTGACTCGGCCACGTGGATGCCCATGCAGCAATCATGGGGGGCAGTTTGGAAACTGGACGCAGGGTCAGAACTGAAAGCACCGTTCTCCATCAGACTAACCACTGTCGAGTCCGGCAAGTCCGTTGTGGCTAACAATGTAATACCTGCTGGGTGGAAGCCTGGTCAGACTTACCGATCCGTTGTGAATTTTGAAACCTAG 828 0.5133 MAPTLQHAFFYLHSLVAFFIFLATPSFCFNPRKLLNSSYSPSGSDWKPAEATWYGSPTGAGSDGGACGYGSAVEQPPFSSMISAGGPPLYESGKGCGACYEVKCTGNPACSGNPVKVVITDECPGCGSAQTVHFDLSGSAFGAMAVSGQAQQLRNAGILQIQHRRVECNYRGMSIAFHVDTGSNSNYFASLIEYEDGDGDLAKVELKHSIDSATWMPMQQSWGAVWKLDAGSELKAPFSIRLTTVESGKSVVANNVIPAGWKPGQTYRSVVNFET 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1203 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Glsi06g1203 275 SMART dpbb_1 82 163 IPR007112 -
Glsi06g1203 275 CDD DPBB_EXPB_N 46 168 - -
Glsi06g1203 275 Pfam Lytic transglycolase 83 162 IPR009009 -
Glsi06g1203 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 173 IPR007112 -
Glsi06g1203 275 SUPERFAMILY PHL pollen allergen 175 269 IPR036749 -
Glsi06g1203 275 Gene3D - 33 169 IPR036908 -
Glsi06g1203 275 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Glsi06g1203 275 PANTHER EXPANSIN-B3 22 273 - -
Glsi06g1203 275 Gene3D - 170 274 IPR036749 -
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Major pollen allergen Lol pI signature 104 114 IPR005795 GO:0005576|GO:0019953
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Glsi06g1203 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Glsi06g1203 275 SUPERFAMILY Barwin-like endoglucanases 38 172 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1203 Glsi-ChrGlsi06 19722851 19724520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1203 26 273 Expansin Gene Family AT1G65680 63.710 9.42e-121 344