Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1200 ATGGCTTTAATTGTGGATCCACAATCAAACTTCAAGCACTTCTGCAAAATCTGTAAGAAAGGTTTCGGGTGTGGGAGAGCTCTAGGAGGGCACATGAGGGCACATGGCATAGGCGACGAGAGTGGGAACATGGACGACGATGACCCTGCAAGTGATTGGGAAGACAAGAACATGCCTCCTACCAATAAACGAATGTACGCTTTGAGAACAAACCCTAATCGGCTAAAGAGTTGTAGGGTTTGTGAGAATTGTGGCAAGGAGTTTCTGTCTTGGAAATCTTTCCTCGAACACGGCAAGTGCACCTCCGAAGACGCCGAGTCCCTTGTCTCGTCGCCGGGCTCCGATGGTGATGATGGCGTGGGTCGGAGAGGTTGTGGTTGGTCCAAAAGGAAAAGATCATTGAGAGCAGCAAAAGTGGGTAACTTCAACCCTAATTGCTCATATTCCAACGAGGAAGAAGATCTCGCCAACTGTTTGATGATGTTGTCGAATGCCGCCGTTGATCCTCTCGTCGCTGAGCCGGAGGAATCTTGTGCCTCAGCTAGCAAAGATGAAGAACGAAGGAACCCCATGAGCTTCATGAATGCTCCAATGTCTTGTAGAATCCCAATAGATAACAAAGCAAAAGGGGTTGCAAAAGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTCTTCAATTCCCACCAAGCATTGGGTGGCCATAGGGCAAGCCACAAAAAGGTTAAAGGCTGCTTCGCTGCCCGGCTTGACAACCTCGACGACGGCCTTGGTGGAGCCGACGATGATGTCATAACCCATGAAGATCAATTTTTCCCAACAAAATCAAACTCAACCCTTCAATTCGATCATGGCTCCAATGTCGCCACATTAATGGCCTCTTCCTCCAAGAGAAAATCGAAAGTTCACGAATGCTCTATATGCCACCGCGTTTTCTCGTCGGGACAAGCCTTGGGAGGGCACAAGAGGTGCCATTGGATCACGTCAAATGCACCTGACACCTCCACGTTGGCTAGATTCCAGCAATTTCAAGACCACATGGAACATATGAATCATCAAATACCAAAGTTCGATGATTCTGCAGAGCCATTTGATCTGAAACTCGATCTCAACCTTCCCGCTCCGTCCCCGGATCACCTCACCGGCCGGCGTGACGTATCAACAGAAATTTACTTGCAGTCATGGGTGGGAACGAAGGACAAAGACGATAACAGTCAAAGCCATGGCCATCTTCACCACCACCACTATCATCGTCATGAAATGGACAATGAGAACGACGAAGACAAAAACAAAAACAATATTAACAACAACAACGTTCGCAATGCTCCAATGCAAAATGTGGATGACGAAGCCGACAGTAAGATGAAGTTAGCGAAACTAAGTGACCTAAAGAACATGAACATAGGAGGGAGTTCTTCGCCGTGGTTGCAGGTGGGAATCGGTTCAACAGCTGACGTGGGAGCTGACCCACGATAG 1473 0.4807 MALIVDPQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGNMDDDDPASDWEDKNMPPTNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDGDDGVGRRGCGWSKRKRSLRAAKVGNFNPNCSYSNEEEDLANCLMMLSNAAVDPLVAEPEESCASASKDEERRNPMSFMNAPMSCRIPIDNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDGLGGADDDVITHEDQFFPTKSNSTLQFDHGSNVATLMASSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHMEHMNHQIPKFDDSAEPFDLKLDLNLPAPSPDHLTGRRDVSTEIYLQSWVGTKDKDDNSQSHGHLHHHHYHRHEMDNENDEDKNKNNINNNNVRNAPMQNVDDEADSKMKLAKLSDLKNMNIGGSSSPWLQVGIGSTADVGADPR 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1200 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 302 324 IPR013087 -
Glsi06g1200 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 216 243 IPR013087 -
Glsi06g1200 490 MobiDBLite consensus disorder prediction 416 432 - -
Glsi06g1200 490 Gene3D Classic Zinc Finger 11 100 - -
Glsi06g1200 490 MobiDBLite consensus disorder prediction 464 478 - -
Glsi06g1200 490 ProSitePatterns Zinc finger C2H2 type domain signature. 218 238 IPR013087 -
Glsi06g1200 490 SUPERFAMILY beta-beta-alpha zinc fingers 215 324 IPR036236 -
Glsi06g1200 490 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Glsi06g1200 490 SMART c2h2final6 302 324 IPR013087 -
Glsi06g1200 490 SMART c2h2final6 13 35 IPR013087 -
Glsi06g1200 490 SMART c2h2final6 216 238 IPR013087 -
Glsi06g1200 490 Gene3D Classic Zinc Finger 214 324 - -
Glsi06g1200 490 ProSitePatterns Zinc finger C2H2 type domain signature. 304 324 IPR013087 -
Glsi06g1200 490 MobiDBLite consensus disorder prediction 398 446 - -
Glsi06g1200 490 Pfam C2H2-type zinc finger 301 326 - -
Glsi06g1200 490 Pfam C2H2-type zinc finger 216 240 - -
Glsi06g1200 490 Pfam C2H2-type zinc finger 13 35 - -
Glsi06g1200 490 PANTHER OS02G0659100 PROTEIN 2 485 - -
Glsi06g1200 490 MobiDBLite consensus disorder prediction 38 63 - -
Glsi06g1200 490 MobiDBLite consensus disorder prediction 463 490 - -
Glsi06g1200 490 SUPERFAMILY beta-beta-alpha zinc fingers 13 98 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1200 Glsi-ChrGlsi06 19546585 19548057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1200 97 371 C2H2 Transcription Factor Family AT1G02040 35.587 8.77e-32 122