Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1198 ATGGAGAGGCACGAGTGCAAGCTTTGCTTTAGGAGCTTCCCTAATGGCAGAGCTTTGGGGGGTCACATGAGGTCTCACATGAAGAAGCTTCCACTTCCTACAAAACGGGAGGAATCACCGCCCATCTTGCTCAGTTTCGAGGCCGAGTCAGCTTCTTCTCCATCATCATCCTCAGATGAAGAAGATAAGGGTCTGAGTTACGGGCTAAGAGAGAACCCAAAGAGGAGCATTCGCATGGCAGATCCTGAGTTTTCGTTCGTTGTAGATACTGGGTCTGTGATTCTTCAGGACAGAGAGAGCGAGACCGAGTCGTCGAAAAACCCAACTCGGAGACGATCCAAACGGGCTTGGAAATTGGGCGGCTTGGATGATCAGTACCATCGTGGGAATCAAATTCAAGAGCAAGAAGCCATGAAAAAGCTCAAATCGAACAAACCCAGTAAGACCGAGTCTTGGGTTGTTGAGCCTGAAACGGTGAGTTCAATATCTGATGCCACAACCGAAGAAGACGTCGCTTTCTGCCTGATGATGCTGTCTAGGGACAAATGGAAGAGACAAAAGGATCAAGATCGATGGCTAGAAGACCAAGACGACGACGAAGAGGAAGAAGACGATGACAAAGAAGCTGAAAGATCTTTGGAGGATACTGACGAATCCGAGGAGTTCAAATCGTCCAAAACCAGGCTGCGAGGAAGATACACATGCGAGACTTGCAATAAAGTGTTTCGATCTTACCAAGCACTTGGTGGGCACAGAGCGAGTCATAAGAAGATCAAAGTTTCAACTGCAATTGAAGAACCTGAATTGGAGGTAGAGAATGGTGGCGCTTCTTCTGCTCCTCCCATGGCGGCTAATGCTAAGAAAATCTATGAATGCTCATTTTGTTTCAGAGTGTTTTCTTCAGGTCAGGCTCTTGGCGGACACAAGAGGACCCATATTACTGGTTCAGCAGCAAGAATACAAATTCGAGCTTCCCCGAAGCTCGTTGAAGAAAATTTGCTAGATCTTAACCTTCCTGCTCCAATGGAGGACGATGAAATCAGCCAAATCGAGAACTCTGCGGTTTCATATGCAGAATTCGTTAACCCCATTAAACAATGA 1101 0.4687 MERHECKLCFRSFPNGRALGGHMRSHMKKLPLPTKREESPPILLSFEAESASSPSSSSDEEDKGLSYGLRENPKRSIRMADPEFSFVVDTGSVILQDRESETESSKNPTRRRSKRAWKLGGLDDQYHRGNQIQEQEAMKKLKSNKPSKTESWVVEPETVSSISDATTEEDVAFCLMMLSRDKWKRQKDQDRWLEDQDDDEEEEDDDKEAERSLEDTDESEEFKSSKTRLRGRYTCETCNKVFRSYQALGGHRASHKKIKVSTAIEEPELEVENGGASSAPPMAANAKKIYECSFCFRVFSSGQALGGHKRTHITGSAARIQIRASPKLVEENLLDLNLPAPMEDDEISQIENSAVSYAEFVNPIKQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1198 366 MobiDBLite consensus disorder prediction 63 78 - -
Glsi06g1198 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 260 IPR013087 -
Glsi06g1198 366 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 363 IPR044303 GO:0006355
Glsi06g1198 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 95 120 - -
Glsi06g1198 366 SUPERFAMILY beta-beta-alpha zinc fingers 232 312 IPR036236 -
Glsi06g1198 366 Gene3D Classic Zinc Finger 230 312 - -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 20 82 - -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 46 62 - -
Glsi06g1198 366 Pfam C2H2-type zinc finger 290 312 - -
Glsi06g1198 366 Pfam C2H2-type zinc finger 232 257 - -
Glsi06g1198 366 Pfam C2H2-type zinc finger 3 29 - -
Glsi06g1198 366 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Glsi06g1198 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 290 312 IPR013087 -
Glsi06g1198 366 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 99 120 - -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 193 215 - -
Glsi06g1198 366 SMART c2h2final6 4 26 IPR013087 -
Glsi06g1198 366 SMART c2h2final6 233 255 IPR013087 -
Glsi06g1198 366 SMART c2h2final6 290 312 IPR013087 -
Glsi06g1198 366 ProSitePatterns Zinc finger C2H2 type domain signature. 292 312 IPR013087 -
Glsi06g1198 366 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Glsi06g1198 366 MobiDBLite consensus disorder prediction 186 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1198 Glsi-ChrGlsi06 19490797 19491897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1198 1 350 C2H2 Transcription Factor Family AT3G60580 42.254 1.65e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi06g1198 zf-C2H2_6 7.6e-08 CL0361