Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1158 ATGTCCGCCTCATCCACTTCCTCCTTTTCACCGGACCAGCTCCTTTCTCCCTCCGACCAGCTGTGCTATGTTCATTGTAATTTCTGTGACACTGTTCTCGCGGTGAGTGTTCCTCGCACCAGCTTGTTCAAGACTGTCACTGTGAGATGCGGCCATTGCACCAACCTTCTGTCTGTGAATATGTGTGGGATGCTTCTTCCTTCTGCCAATCAGCTTCACCTTGGACACTCCATCTTCACTCCTCAAAATCTTCTGGAGGAGATTCGAAATGCACCATCATCAAATATGCAGATGAATCAGCTGCCGTACCCAAATGATCATTCGGTTGTGAGTGCCCTGCGAGGAGGACCTGAGGAAATCCCTAAACCTCCACCACCACCAGCTAACAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAAGCTGGGAATCCTGATATAAGCCACAGAGAGGCCTTCAGTGCTGCTGCTAAGAATTGGGCCCATTTCCCACACATCCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAACATGCGCCAGGAAGGAGAGGACGTGCTTATGAAAGATGGGTATTTCCCTCCTGCAAATGTAGGTGTCTCTCCCTTTTAG 660 0.4939 MSASSTSSFSPDQLLSPSDQLCYVHCNFCDTVLAVSVPRTSLFKTVTVRCGHCTNLLSVNMCGMLLPSANQLHLGHSIFTPQNLLEEIRNAPSSNMQMNQLPYPNDHSVVSALRGGPEEIPKPPPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANMRQEGEDVLMKDGYFPPANVGVSPF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1158 219 CDD HMG-box_SF 137 173 - -
Glsi06g1158 219 Gene3D High mobility group box domain 123 179 IPR036910 -
Glsi06g1158 219 MobiDBLite consensus disorder prediction 95 137 - -
Glsi06g1158 219 Pfam YABBY protein 17 183 IPR006780 GO:0007275
Glsi06g1158 219 MobiDBLite consensus disorder prediction 118 133 - -
Glsi06g1158 219 PANTHER PROTEIN YABBY 6-RELATED 5 195 IPR006780 GO:0007275
Glsi06g1158 219 SUPERFAMILY HMG-box 123 177 IPR036910 -
Glsi06g1158 219 FunFam Axial regulator YABBY 128 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1158 Glsi-ChrGlsi06 17379480 17382567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1158 28 217 C2C2-YABBY Transcription Factor Family AT4G00180 60.476 8.91e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi06g1158 YABBY 2e-71 CL0114