Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1145 ATGCTGTCTATGGCAGCCTTTCGCTTGCTAATAGCACTTCTAATTGTTCCAGCTCTTATTTCATCTTCTGTTTCTGGCGACTCACTGAGTGACATTAAATCATGGTGCAGCCAAACCCCAAACCCTCAGCCATGTGAGTATACCTTCTTGAGCAGTAAAGCTGTGAGCAGAAAACCCATCAAGAGTAAGTCTGATTTCCTCAAGGCTTCTCTAGAACTCGCCTTAGAGAAAACCCAGAACGAAGAAGAAACAACTCGTTCACTGGGCCCTAAGTGCAGGAACTCACGTGAGAAAGCTGCATGGACTGATTGCCTTGACCTCTATGAGTACACCAAGCACAGGCTCAACAAAACCATAGACCCTTACTCCAAGGGCACCCAAGCTGATACCCAGACATGGCTTAGCACAGCCCTAACCAACCTCGAGACATGCAAAGTAGGGTTTTATGAGCTTGGATCTACTGACTATATATGGCCCTTGATTTCGGACAATAATATTACTAAGTTACTAAGCAATAGCTTGTCTCTGAATTACAAGGCTCCACCCAAGGAACAATCTTATAAAGATGGGTTTCCAACATGGGTCAAGGCCGGTGACCGGAAGCTGTTGCAGTCGTCTTCTCCGGCTTCTCAGGCAAATGTTGTGGTGGCTAAAGATGGATCTGGCAAGTTCACTACAGTGAAGGACGCCATTAATGCTGCACCGAAGAGTAGCAGTGGAAGGTATGTGATCTACGTGAAGGCAGGAGTGTATAATGAACAAGTTGAGATCAAAGCAAAGAATATTATGTTGGTGGGAGATGGTATAGGGAAGACTATTATTACTGGTAGCAAAAGTGTTGGAGGAGGCACCACCACCTTCGGTTCAGCCACCGTCGCTGTTGTTGGGGATGGGTTTATTGCTAGAGATATCACATTCAGGAATACTGCTGGAGCAGCAAACCATCAAGCTGTAGCATTGCGTTCAGGGTCAGATCTATCAGTATTTTACAAATGTGGCTTTGAGGGTTATCAAGATACACTATATGTGCATTCCGAGAGGCAATTTTATAGGGAATGTGAGATCTACGGTACAGTTGACTTCATCTTTGGTAACGCAGCTGTGGTTCTGCAAAACTGTAACATTTTTGCTAGAAACCCTCCCCAGAAAACCATCACAGTCACAGCTCAGGGCCGAACGGATCCAAACCAAAACACTGGAATCATCATTCACAATTCTAAAGTCACAGCAGCCTCGGACTTGAATCCGAGCTCGGTTAAGGCTTATCTTGGAAGGCCATGGCAGAAATATTCAAGAACAGTTTTCATGAAAACTTTCCTTGATAGTCTGATTAACCCTGCTGGTTGGATGCCATGGAGTGGTAACTTTGCCCTAGACACTTTGTTCTATGCAGAGTACGCGAACACAGGCCCCGGTTCTTCAACTGCAAATAGGGTTAAATGGAAGGGTTACCGTGTTCTTACCAGTGCATCTCAAGCTTCACCATTCACAGTTGGAAACTTCATTGCTGGCAATTCATGGTTACCAGCCACAAATGTGCCTTTTACCTCTGGCCTTTGA 1560 0.4526 MLSMAAFRLLIALLIVPALISSSVSGDSLSDIKSWCSQTPNPQPCEYTFLSSKAVSRKPIKSKSDFLKASLELALEKTQNEEETTRSLGPKCRNSREKAAWTDCLDLYEYTKHRLNKTIDPYSKGTQADTQTWLSTALTNLETCKVGFYELGSTDYIWPLISDNNITKLLSNSLSLNYKAPPKEQSYKDGFPTWVKAGDRKLLQSSSPASQANVVVAKDGSGKFTTVKDAINAAPKSSSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFGSATVAVVGDGFIARDITFRNTAGAANHQAVALRSGSDLSVFYKCGFEGYQDTLYVHSERQFYRECEIYGTVDFIFGNAAVVLQNCNIFARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVTAASDLNPSSVKAYLGRPWQKYSRTVFMKTFLDSLINPAGWMPWSGNFALDTLFYAEYANTGPGSSTANRVKWKGYRVLTSASQASPFTVGNFIAGNSWLPATNVPFTSGL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1145 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Glsi06g1145 519 CDD PMEI-like_3 34 181 - -
Glsi06g1145 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 179 IPR035513 -
Glsi06g1145 519 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Glsi06g1145 519 Gene3D - 208 519 IPR012334 -
Glsi06g1145 519 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
Glsi06g1145 519 SMART PMEI_2 27 176 IPR006501 GO:0004857
Glsi06g1145 519 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Glsi06g1145 519 PANTHER PECTINESTERASE 16 511 - -
Glsi06g1145 519 NCBIfam pectinesterase inhibitor domain 9 178 IPR006501 GO:0004857
Glsi06g1145 519 SUPERFAMILY Pectin lyase-like 207 518 IPR011050 -
Glsi06g1145 519 Pfam Pectinesterase 213 505 IPR000070 GO:0030599|GO:0042545
Glsi06g1145 519 FunFam Pectinesterase 207 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1145 Glsi-ChrGlsi06 17067671 17071654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1145 4 519 Carbohydrate Esterase AT2G45220 66.858 0.0 704