Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1143 ATGGTCACTTGTGCAGCCGCCACTACCGCCTTGCTCCTCCTTCTATCCACAGCGGCTACCACCAGCTTCTGCCACCGTGAAATGGAGCTGCTTCAGATGGCTCAAACCCAGGTTCTACAAGCCCAGACCTGGGCTCAGAGTTCTGTGAGATTGCATGGCCCTATAGACACCACCCTTACATCATCATCATCTCAAACAGCACAGGCTCTTAGAGACTGTTCTAAGCTCTATAAAGAGAGTGAGTCTAGGCTCACCCACATGGTGTCAGAGGAGAATGAAAAGAGCAGCAGAGAAGATGCTCTTACGTGGGTAAGTGCAGTGATGACGAACCACAAAACTTGCTTGGATGGGTTGGAGGAAAAAGGGTATGTGGGAGCTGAGGTTTTGGGTAGAAACTTGACCATGTTGCTTAAGGAAGCTCTTGCTTTTTATACAAAAAATAAGGACAAAGAAAAAGGACCACCACAGGGAAGCATATCAAAGTCATATAGTGGCCTATTAGCAACATGGAGCCCAGCAACATCCAAGGCAGATTTCGCAGTGGCAAAGGATGGTTCAGGCAGCCACAAAACAATCAGAGAAGCAGTAGCTGCAGTGGCTGCAATGGGTCACAACCGTCCTGAAAGAGTGGTTATCCGCGTCAAATCAGGAGTATATAATGAGAAAGTAGAGATAGGGTACAAGGTGAAGAATGTGATGTTTGTAGGAGATGGCATTGACAAAACTGTTGTCACTGGCAACAGAAATGTCGTTCAGGGTTCTTCCACTCTCGGCTCCGCCACATTTGATGTATCAGGGGATGGCTTTTGGGCAAGAGATATGACATTTGAGAACACAGCAGGCCCAGAGAAGCACCAAGCTGTGGCACTAAAGGTGAGCTCAGACCTATCAGTCTTCTACAGATGCAGCTTCAAAGCTTACCAAGACACCCTTTTTGTGCATTCTAATCGGCAATTCTACCGAGACTGTCTCATTTATGGTACCATAGATTTCATATTTGGAGATGCCTCAGTCATTTTCCAAAAGTGTGACATTCTAGTGAGAAAACCAATGAGCCACCAATCCAACTTCATCACAGCACAAGGACGAGACGATCCTAACCAGCCCACTGGGATTTCAATCCAGAGTTGTAGGGTTAGGCCTGCTTCTGATCTTGCTGATGTAAAGGGCTCCTTCAAGAGCTACTTAGGGAGGTCCTGGAAGAAGTACTCTAGGACTGTGTTCTTGAAGACAGATTTAGATGGGTTGATTGACCCTAAAGGGTGGAGAGAATGGAGTGGAAATTTTGCACTTTCCACTCTGTACTATGGAGAGTACATGAACACAGGCAGTGGTGCCTCTACCAAGTACAGGGTGAACTGGCCTGGTTTTCATGCGCTGAATAGCCCTAATGAAGCCAGACCCTTTACAGTGAATCAGTTTTTTCTCGGAGACCAGTGGATTCCAGCCACTGGTGTGCCATTTTCGGCCGGAATTTAA 1479 0.4692 MVTCAAATTALLLLLSTAATTSFCHREMELLQMAQTQVLQAQTWAQSSVRLHGPIDTTLTSSSSQTAQALRDCSKLYKESESRLTHMVSEENEKSSREDALTWVSAVMTNHKTCLDGLEEKGYVGAEVLGRNLTMLLKEALAFYTKNKDKEKGPPQGSISKSYSGLLATWSPATSKADFAVAKDGSGSHKTIREAVAAVAAMGHNRPERVVIRVKSGVYNEKVEIGYKVKNVMFVGDGIDKTVVTGNRNVVQGSSTLGSATFDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKAYQDTLFVHSNRQFYRDCLIYGTIDFIFGDASVIFQKCDILVRKPMSHQSNFITAQGRDDPNQPTGISIQSCRVRPASDLADVKGSFKSYLGRSWKKYSRTVFLKTDLDGLIDPKGWREWSGNFALSTLYYGEYMNTGSGASTKYRVNWPGFHALNSPNEARPFTVNQFFLGDQWIPATGVPFSAGI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1143 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 135 IPR035513 -
Glsi06g1143 492 FunFam Pectinesterase 172 492 - -
Glsi06g1143 492 Pfam Pectinesterase 179 477 IPR000070 GO:0030599|GO:0042545
Glsi06g1143 492 Gene3D - 172 492 IPR012334 -
Glsi06g1143 492 Pfam Plant invertase/pectin methylesterase inhibitor 27 140 IPR006501 GO:0004857
Glsi06g1143 492 SUPERFAMILY Pectin lyase-like 173 491 IPR011050 -
Glsi06g1143 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 15 146 IPR035513 -
Glsi06g1143 492 PANTHER PECTINESTERASE 24 482 - -
Glsi06g1143 492 SMART PMEI_2 15 143 IPR006501 GO:0004857
Glsi06g1143 492 NCBIfam pectinesterase inhibitor domain 58 132 IPR006501 GO:0004857
Glsi06g1143 492 CDD PMEI-like_4 30 147 - -
Glsi06g1143 492 ProSitePatterns Pectinesterase signature 2. 325 334 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1143 Glsi-ChrGlsi06 16856219 16861981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1143 9 492 Carbohydrate Esterase AT3G60730 55.792 0.0 586