LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g1123	ATGTATTTTCAATCATTGTTTAGTAAGGTTATCTATGCATTTGGGAACAATTTGACTGGATTGGTTGCTGAGTTTGGATCCTATACCTCATTGGTGTGGCCTGAAATTGCTTACACTTGTATGCAAGGTTATCAGCCCCTAAACATGGATGAGTACCAAGAGATGGAGAGATTTGGGATGGAGAATGATTTTGAGGATGGCAGATGGATTGGTGACGAGTTCTACTACCGAAAACGCAAAGAAAAGCGTACACAAACCAGAGAAGATGTTCTTTATGGAGTTTTTGCAGACTCTGATGATGACGACGACGACTATTCCAACAAAAAGCGTAGAAAAGATCGTGAATTGTCTAAGAAGGCTGACCTCACCAAGCCTGTGAATTTTGTCTCTACTGGCACTTTTATGCCTAATCAGGATATTGATAACAATTCCAAAGAGCAGAGTGAAAAAGAAAATTATACTAGTGAGGATAGGCCAGGTATAGGTCTTGGCATGGGAACTACTAGCACTTCTGGATCTGGTTTAGGTTTCAATTCTAGTTATCATGAAAATGCTTCGGATGATGAGAAAAATGATGATAATTTTCTGCCTACGGCATTTGGAAAGAAGATTAAGGAGGGAGCAATGAAAAGGGAGAGGGAAAGGGAGAGAGCAAAATTGGAGAAGAGAGGTCAAGGTCAAACTCAAGCTCAAGATAAATTTATGGATGTGGGGAAGTTTGAGAAGCATACTAAGGGAATTGGAATGAGGCTATTGGAGAAGATGGGCTATAAAGGAGGTGGTCTTGGGAAGAACGAGCAAGGTATTGTGGCTCCTGTTGAGGCCACTATGAGGGTTAAGAATACGGGCATTGGATTTAATGACTCCAAGGAAACTACTCCTCTGCCTGGTTTGCAGGTTGAGAAGAAGACCTTGCCTGGAATCACTCAACCTACAGTTGGTAGAGCAAAAGAAAGGTTATGGTCAAAGAAGTCAAGGTTGAAGAAGAAGAAAGAAGATGATGATTATATTACTGCTGATCAGTTATTGGCAAGTAAGCAAGAACAAGGTTTGGAGGTTGTTCAGAAGGTTTTTGATATGAGAGGGCCGCAGGTTCGGGTAATAACAAATTTGTCTGATTTGAATGCGGAGGAGAAGGCAAAGGAAAATGATGTTCCAATGCCAGAGCTTCAGCATAATATGGGGTTAATTCTCAGATTGGCTGAGGCTGATATCCAAGAGATTGATAGAAATTTGAGTAGAGAGAGGGAGACAGCACTTAGCTTGAAAAAGGAGAAAGAGAAGTTAGAAACTGAGGCAGCACTCCAAAAAAAGCAGTTGGAAAATTTAGAGGAACTAATGAGTGTGTTGGACCGATTGGAAGAAGAGAACTCCATGGGGACATTAACATTGGATTTGCTTGCACAATGCTTTAGTGACCTACGGAAAAGATATGCTGATAACTACAAGTTGTGCAACTTGTCATGTATTGCTTGCTCATATGCTTTACCTTTGTTTATTAGAGTATTCCAGGGATGGGATCCTCTTCGACATCCGTCACATGGATTGGAATTGGTATCACTGTGGAAAACACTCCTTCAAGGAGAGGATTGCCTCGATATATGGGATGTAACATCACCTTATACTCAATTGATTTCTGAAGTTGTATTACCAGCTGTTAGGATTTCTGGAATCAATACCTGGCAAGCACGGGATCCTGAACCAATGTTACGATTTGTGGAGTCATGGGAAAGGTTGCTTCCTTCTTCAGTTCTCACTACCATATTAGATAATATAGTCATGCCAAAACTGTCAAGTGCTGTAGATACATGGGAACCACATCGTGAGACAATTCCTATCCATACGTGGGTGCATCCATGGCTACCTCTGTTAGGACACAAATTAGAGGGCATGTACCAGATGATACGCTTCAAATTAAGTACTGTTCTTGGTGCCTGGCACCCAAGTGATGGTTCTGCTTATGCTATATTGTCACCTTGGAAGCCTGTATTTGATTCAGCAAGTTGGGAACAACTTATGCTTCGATTTATTGTGCCAAAGTTGCAGCTTGTCTTACAAGAGTTCCAAGTGAACCCAGCAGATCAAAAACTTGATCAATTTTATTGGGTGATGAATTGGGCTTCTGCTGTTCCAATTCATCTTATGGTTGATATAATGGAGAAGTTCTTCTTCACCAAGTGGCTTCAGGTTTTGTACCATTGGTTATGCTCAAATCCTAACTTTGAAGAAGTTACAAAATGGTATTTGGGCTGGAAAGAACTTATTCCACAAGAACTTTTGGCAAATGAAAGTATTCGCTATCAGCTTAATTGCGGTCTTGATATGATGAATCAGGCCGTTGAAGGTATGGAGTTGATCCAACCTGGTTTGAAAGAAAATATCAGCTATCTTAGAGTACTTGAGCAAAGGCAATTTGAGGCTCAGCAAAAAGCAGCAGCCCATGCACAACCACAAGCTGCTTCGAGTTTGCGTGGTGCTGTTCATATGGATGGGGTGGGTGGTGTACATGAGCTGAGCTTGAAAGAAGTCATTGAGGCCCATGCACAACAACATGGTTTGCTATTCAAGCTTAAACCTGGTAGAATGCACAATGGTCATCAAATATATGGGTTTGGTAATGTCAGCATTATAATAGACTCTCTAAATCAGAAGGTATATGCCCAAACTGAGGAAACATGGTCTTTGGAATCTCTCCAAGGCTTGCTTGAGTTGCATAATAAATCCCTAATTATCAGGAAAATGAGAGGGATTTTGGCCAGGCGTAGTTATAGAAAGTGA	2778	0.4107	MYFQSLFSKVIYAFGNNLTGLVAEFGSYTSLVWPEIAYTCMQGYQPLNMDEYQEMERFGMENDFEDGRWIGDEFYYRKRKEKRTQTREDVLYGVFADSDDDDDDYSNKKRRKDRELSKKADLTKPVNFVSTGTFMPNQDIDNNSKEQSEKENYTSEDRPGIGLGMGTTSTSGSGLGFNSSYHENASDDEKNDDNFLPTAFGKKIKEGAMKRERERERAKLEKRGQGQTQAQDKFMDVGKFEKHTKGIGMRLLEKMGYKGGGLGKNEQGIVAPVEATMRVKNTGIGFNDSKETTPLPGLQVEKKTLPGITQPTVGRAKERLWSKKSRLKKKKEDDDYITADQLLASKQEQGLEVVQKVFDMRGPQVRVITNLSDLNAEEKAKENDVPMPELQHNMGLILRLAEADIQEIDRNLSRERETALSLKKEKEKLETEAALQKKQLENLEELMSVLDRLEEENSMGTLTLDLLAQCFSDLRKRYADNYKLCNLSCIACSYALPLFIRVFQGWDPLRHPSHGLELVSLWKTLLQGEDCLDIWDVTSPYTQLISEVVLPAVRISGINTWQARDPEPMLRFVESWERLLPSSVLTTILDNIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGMYQMIRFKLSTVLGAWHPSDGSAYAILSPWKPVFDSASWEQLMLRFIVPKLQLVLQEFQVNPADQKLDQFYWVMNWASAVPIHLMVDIMEKFFFTKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPQELLANESIRYQLNCGLDMMNQAVEGMELIQPGLKENISYLRVLEQRQFEAQQKAAAHAQPQAASSLRGAVHMDGVGGVHELSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQTEETWSLESLQGLLELHNKSLIIRKMRGILARRSYRK	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g1123	925	Pfam	Tuftelin interacting protein N terminal	54	154	IPR022159	-
	Glsi06g1123	925	MobiDBLite	consensus disorder prediction	204	223	-	-
	Glsi06g1123	925	MobiDBLite	consensus disorder prediction	127	230	-	-
	Glsi06g1123	925	Pfam	G-patch domain	244	285	IPR000467	GO:0003676
	Glsi06g1123	925	ProSiteProfiles	G-patch domain profile.	244	289	IPR000467	GO:0003676
	Glsi06g1123	925	PANTHER	TUFTELIN-INTERACTING PROTEIN 11-RELATED	49	900	IPR045211	GO:0000390
	Glsi06g1123	925	Pfam	GC-rich sequence DNA-binding factor-like protein	465	731	IPR022783	-
	Glsi06g1123	925	ProSiteProfiles	IQ motif profile.	903	925	IPR000048	GO:0005515
	Glsi06g1123	925	Coils	Coil	398	456	-	-
	Glsi06g1123	925	MobiDBLite	consensus disorder prediction	127	142	-	-
	Glsi06g1123	925	SMART	G-patch_5	242	287	IPR000467	GO:0003676
	Glsi06g1123	925	MobiDBLite	consensus disorder prediction	164	182	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g1123	Glsi-ChrGlsi06	16286677	16291326	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g1123	244	285	C2H2 Transcription Factor Family	AT5G26610	50.000	1.90e-07	52.0