Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1086 ATGGGCCTGATTGGAGTAGTGTTTGAAACTGGAAGCCAACAAATCACACTGAACCTACAAACACCTGGAAAGTGGGAACAACTTCGGGTACTCTGGGCAAAACAGAGCATACTGAAATTGGCGTGTTTTACTGAGCAGAGCAGAATGACAATTCATGCAGAAGATTTGGGTGGAGGTTTTGAGTTCAGTTCTCAGAATGGGTTGCTAAGGTATTCTATTCTGAAATTTTTTTTGTGGGAACATGGAAAATTTGAATCAAATAAGAAACAGAAGTTGAGCAAATCTCAGAAAAGGAAGCTGAAAAAGTTTGAGACTGAAACTGTGCTAGAGAGACATAGGAGGATTGTAAATTTATTAAAAGAAGGATTGGATGTTCCACATAGTGCTGAGCTGTCCAAGAAACTGGATCTTCCCCATAGAATTGAACCTGGGACAGAAGAAATTCATTTGGCACAGGAAATTGAAGAAAATTCCTGTGTTGAACCCATAAGATCTGATAGAGAACTATTATTTGAGCCATCTATTTCATTAGAATTCTTTCAAGAACAACCAGCTGAGGTCGAAGATAAAAGAAAGGAGCTCCCAATAGTCATGATGGAGCAACAGATAATGGAAGCTATAAATGACCATTCTACTGTTATTATTTGTGGAGAAACTAGATGTGGTAAAACAACTCAAGTTCCTCAATTTCTTTATGAAGCTGGCTATGGTTCAACAAAGCGTGTGGCATATGAGTTTGCTCTTCATCTGGGGAAGGAGGCTGGCTTTCAAGTTAGATATGACAAGAGGATCAAAGATAGTTGCTCTATCAAGTTTATGACTGATGGAATTTTACCACGTGAAGTTCGGGTTATATTTTATCTAATGAATACCTGTGTGGCTGTAAAGGTTTTGGGTAAACCTGTTGATAGGTTCATAGAAACATTTGTTCATATTAAGGGTCCTAGCGTGTTACTTTTGTACTTCATGGATATTTTTTTATTAAGGCGTTACTCTGTCATAATTCTTGATGAGGCTCATGAGAGGAGCTTGAACACAGACATTCTGATTGGCATGCTCTCACTTGTTATTAAGACTCGCCAGAAGCTTGTGCTAATAAGCGCCGCTTTGAGAGTACAAGACTTCACTGCTGAAAGGGTATTTTGTACTCCGCCACCTGTTATAGAAAGATTGCCACCAGGTGGCATACTTGTCTTTGTCACTGGACAAAGAGAAGTAGAATACTTGTGCAGGAAGCTATGCAAAGCTTCAAGGGAGTCAATAAGGAAAATATCTAAAGAATCTGTAGTAAATGATGGGAGTGTGGTCAACAGAACAAATCTTGTTGAGGGGATAGATATGAAGGACATCAATGATGCATTTGAGATTCATGGAAGTTCAGTCACCCTACAAACTGATAGGTTTAAGGGTTATGATGATGATGATTGTGATGCACATGAGGATGAATCAGACTTTTCTTATAATTCAGAAAAAGATAGTGAATTGGGATTTGATGGTGCTCTCTTTGTTCTACCTCTTTATGCTATGCTGCCTGCAGCAGCCCAACTTTGTGTATTTGAAGGAGTCAACAAGGGAGAGCGGCTTGTTTTTGTTGCCACAAATATTGCTGAAATCCCTTTAACAATCGCAGAGATAAAGTATGTGGTTGATACTGGAAGGGAAAAAGTGAAGAATTACAACTCTTTTAATGGTACAGAAACTTATGAAATACAATGGATAAGCAAGGCATCTGCTGCTCAACGTGCAGGGAGAGCTGGAAGAACTGGACCTGGTCATTGTTACTGTCTTTATTCTTCTGCAGTTACGAGCTTTCCATTTCCTACTCCTCCTAGTGATGCTGCCCTAATTGAAGCAGAGAAATGCTTGAATGCTCTTGAAGCACTTTATGACAAGGCTGCAGCAGCATTGAGCTTGTTAAATCCATTGGTAATGCAGTTTGAAGGCAATGATACTAATAGAGACTCAGAGATGTATGGGAAATCTAGCGTGGCGAATAGTGAGAAAATTACTACAGGTGGTAATGAACAGGAGTACTCATGGATTCATGGAATTCTGAAGGATGTAGAACATGCCTGGCAGATAGGGTTGCCAAATGTATTAGAGTGTCTTATAGTGTCTGGAATGGAGAACAAAGAGTTTGCGCTGTTTGGTATCAAGCGGGCATGGTTGAAGAAAGTATTTTCTTTCATCATTCGTCATCTGTCTCCAATGGAGCCCGAGTTTTTGGTCTACAATGAATTATTACATACAGAAAGACCGTACATACATGGAGTAACAAATGTGGAGCCGGCTTGGCTTGTTGAGCATGCCACGTTTTCATGCATCTTCTCTGAACCCCTGACAGATCCCAGACCTTTCTATGATACTCAGACTGACCAAGTAAAATGTTGGGTCATCCCAAAGTTTGGGCCTTTTTGTTGGCAGCTTTCAAAGCATCAGTCACCAGTTAGCAATAATGATTGTCAGGCTCGAGTGTTTACCTATGCTTTTTTGCTTAAAGGCCAGAAATTTTGGATTGGTTTTGGGAGAGTTTTCAGAGTCACTTTAAGAAGTTATGGTTACAAATGCTTAGTGAGGTGCTTAAGAAGACACCAAAATGCTCTTCACCAATACAAAGGTATTTCCGCTTCAGCTCTTCCCTACAAGAGAACCACACCAAGCTGGCTGAAGATCTCAGCTCAGGATGTGAAAAATCTAAACCCTTGCTTTTGTAACATACTATTTAACTTGGACACTTCCAATATACATGGAAGGAAATTATTGAAGAGAACATTTGTAACTGGTATTATTCTTCATGATTCTTATGGTATTGCTCAGGTGAAGAGTGTAACTGGTAACAAGATCTTGCATACACTGAAGGCCCATGTTGTAAAGTGGTGGGATTTCTTTCAGTCATTTGCTGATGATGACGCTTCGAAGAAAATTATGAAGCAATCGTCTATCGAGTTGACGCATCTTCTGGGGGATCTCGATTTTGGAGGCACTTGTTCATCTTCTAAACAGCGTTATCACAGTGCTATCATGTTTGCCATGAAGGACAAGCTGGATATTACGCTTAAAGATGCTATTGGATCATTTATCAGGTTAGTTATGGAGCAAACTTACTTGGGAGAGGTGGAAAGTGCATCCCCTGTTGCATTTGAGTTGGGTTGCCCTCAAACTGAACCTTGGTGTCAGTATTTAGGGTTGGCATTTTACTTGTGTAAAGCTTTTACTCTAGTAAATTTTGTTTTTGACATAATGAATATTCTTTTGTAA 3258 0.3969 MGLIGVVFETGSQQITLNLQTPGKWEQLRVLWAKQSILKLACFTEQSRMTIHAEDLGGGFEFSSQNGLLRYSILKFFLWEHGKFESNKKQKLSKSQKRKLKKFETETVLERHRRIVNLLKEGLDVPHSAELSKKLDLPHRIEPGTEEIHLAQEIEENSCVEPIRSDRELLFEPSISLEFFQEQPAEVEDKRKELPIVMMEQQIMEAINDHSTVIICGETRCGKTTQVPQFLYEAGYGSTKRVAYEFALHLGKEAGFQVRYDKRIKDSCSIKFMTDGILPREVRVIFYLMNTCVAVKVLGKPVDRFIETFVHIKGPSVLLLYFMDIFLLRRYSVIILDEAHERSLNTDILIGMLSLVIKTRQKLVLISAALRVQDFTAERVFCTPPPVIERLPPGGILVFVTGQREVEYLCRKLCKASRESIRKISKESVVNDGSVVNRTNLVEGIDMKDINDAFEIHGSSVTLQTDRFKGYDDDDCDAHEDESDFSYNSEKDSELGFDGALFVLPLYAMLPAAAQLCVFEGVNKGERLVFVATNIAEIPLTIAEIKYVVDTGREKVKNYNSFNGTETYEIQWISKASAAQRAGRAGRTGPGHCYCLYSSAVTSFPFPTPPSDAALIEAEKCLNALEALYDKAAAALSLLNPLVMQFEGNDTNRDSEMYGKSSVANSEKITTGGNEQEYSWIHGILKDVEHAWQIGLPNVLECLIVSGMENKEFALFGIKRAWLKKVFSFIIRHLSPMEPEFLVYNELLHTERPYIHGVTNVEPAWLVEHATFSCIFSEPLTDPRPFYDTQTDQVKCWVIPKFGPFCWQLSKHQSPVSNNDCQARVFTYAFLLKGQKFWIGFGRVFRVTLRSYGYKCLVRCLRRHQNALHQYKGISASALPYKRTTPSWLKISAQDVKNLNPCFCNILFNLDTSNIHGRKLLKRTFVTGIILHDSYGIAQVKSVTGNKILHTLKAHVVKWWDFFQSFADDDASKKIMKQSSIELTHLLGDLDFGGTCSSSKQRYHSAIMFAMKDKLDITLKDAIGSFIRLVMEQTYLGEVESASPVAFELGCPQTEPWCQYLGLAFYLCKAFTLVNFVFDIMNILL 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1086 1085 CDD SF2_C_RHA 389 597 - -
Glsi06g1086 1085 PANTHER ATP-DEPENDENT RNA HELICASE 101 601 - -
Glsi06g1086 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 629 IPR027417 -
Glsi06g1086 1085 Pfam Helicase conserved C-terminal domain 501 589 IPR001650 -
Glsi06g1086 1085 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 735 770 IPR011709 -
Glsi06g1086 1085 Gene3D - 924 958 - -
Glsi06g1086 1085 Gene3D - 176 377 IPR027417 -
Glsi06g1086 1085 Gene3D - 378 602 IPR027417 -
Glsi06g1086 1085 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 332 341 IPR002464 -
Glsi06g1086 1085 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 388 IPR014001 -
Glsi06g1086 1085 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 647 IPR001650 -
Glsi06g1086 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 598 IPR027417 -
Glsi06g1086 1085 SMART ultradead3 192 399 IPR014001 -
Glsi06g1086 1085 SMART Ribosomal_S13_N_2 862 937 IPR012606 GO:0003735|GO:0005840|GO:0006412
Glsi06g1086 1085 Pfam Ribosomal S13/S15 N-terminal domain 870 898 IPR012606 GO:0003735|GO:0005840|GO:0006412
Glsi06g1086 1085 SMART helicmild6 493 589 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1086 Glsi-ChrGlsi06 15195178 15205565 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1086 872 955 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 52.381 7.89e-17 77.0