Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1081 ATGTCTCTTCTCCTGTACCTCCTTCTGGAAGTTCAAGTTCTTCTCATTTGTGCTTCTCCATCTCTTTCTGCCATCACGGAGCTTGACACTCTCATGGCCATCAAAGACTCTCTAGACCCAGAGAACCGATTGTTGACCTCATGGACCCTCCACTCTCACCCTTGCCAAGATTTTGAAGGAGTGGCTTGCAACGAGCAAGGTCGCGTTACTAATATTTCACTGCAAGGAAGGGGTCTGTCCGGGCGAGTACCTGCTGCTGTGGCTGCGCTCAAGAGCTTGACAGGTCTGTACCTTCACTTCAATGAACTGAATGGGGAAATACCGAAGGAGATTGCAAATTTGACTGAGCTAAGTGATTTGTATCTGAATGAGAATAACCTCTCTGGGAATATCCCTCGTGAGATTGGCAGCATGTCTAATCTTCAAGTTTTGCAGCTTTGTTACAACAAGCTTACTGGGAGTATACCAACTGAACTAGGAAATTCGAGGAGGCTGAGTGTTCTTGCTCTGCAATATAATCAATTAAGTGGTGCAATTCCTGCAAGTTTGGGTGAATTGGATACATTAATGCGAGTAGATCTGAGCTTTAATAGCCTTTTTGGCTCTATTCCAGTGAGATTAGCTAATGCACCTAGACTGGAGATTCTTGACATTCGAAACAATTCTCTCTCAGGCCATGTCCCTACAGCTCTGAAAAGATTGAAAAGCGAGTTCCAATACATCAACAACCCTGGTTTATGTGGGACTGGATTTGCCAATTTAGGTTCTTGTAAAGTTGTAAGCAGTTTAAACCCTAATAGACCTGAACCTTTTGAAGCTAGTAGTCTTTCTACAAAAGATCTTCCAGCATCAGTTGATCCAACCCCAAAAAACTGCAGTGAGACTCATTGTACAAAGCCATTGAGCTTTTCAAAACTTGGTTTGGTTTTTGGGGTGGTTGGAGTTATTGTTGCTTCCACAGTTGCCTGCCTTTTTGTGCTCTTATGGTACCGTCGTCAGAAACAGAAAATTGGGAGCACTGTTGACACTTCCGATAGCCGGCTAAGTACGGACCAGATCAAGGCAGTTTGCAGGAAAAGTGCTTCTCCCTTGATCAGTTTGGAGTATTCTAATGGATGGGATCCATTAGCCAAAGGCCGAGGTGGTTATTCTCAGGAACTTCTCGAGAGTCTTATGTTCAATCTAGAAGAAGTGGAGTGTGCAACTCAGTGTTTCTCTGATGTAAATTTTTTGGCAAAGAGTAACTTTTCAGCCATCTACAAGGGCATCCTGAGAAATGGATCACTTGTGGCTATAAAGTGCATTGCCAAGACAAGCTGCAAGTCTGATGAAACTGAATTCTTGAAGGGGTTGAAGATATTGACTTCATTAAAACATGAAAATCTAGTTCGGTTGAGAGGCTTTTGCTGTTCAAAAGGCAGGGGGGAGTGCTTTCTTATCTATGATTTTGTCCCAAATGGGAGTTTGTCACAGTATCTTGATGTTAAGAATGGCCATGGTAAGATTCTAGAATGGTCCACCAGAGTATCCATCATCCAGGGTATTGCCAAAGGAATTGGTTATCTGCATGGAAAGAAAGGAAGCAAGCCTGCTCTAGTTCACCAGAATATATCAGCCGAAAAGGTGCTTCTCGATGCCCGGTATAATGCCTTACTTTCAGATGGAGGTTTGCACAAACTCGTTGCAGATGATGTTGTCTTCTCCACCCTCAAAGCCAGTGCTGCTATGGGATATCTAGCTCCAGAATACACAACCACCGGCCGCCTCACTGAAAAGAGTGATGTTTATGCATTTGGGGTGATAGTTTTCCAGCTTCTTACTGGAAAAAGTGATATCACTCAGTTAAATCACCATGGGGTGGCAGAAACATTCAGCTTCAAAGATCTGGCTGATGCGAACCTTGGAGGGAAGTTCTCAGAATCTGAGGCAGCAAAACTAGGAAGGATTGCTCTTCTTTGCACCCATGAATCCCCCCATTGTCGACCATCTATGGAATATGTCTTACAAGAACTAGGTGACAATATTAGCTGTTCAAGACAATAA 2043 0.4351 MSLLLYLLLEVQVLLICASPSLSAITELDTLMAIKDSLDPENRLLTSWTLHSHPCQDFEGVACNEQGRVTNISLQGRGLSGRVPAAVAALKSLTGLYLHFNELNGEIPKEIANLTELSDLYLNENNLSGNIPREIGSMSNLQVLQLCYNKLTGSIPTELGNSRRLSVLALQYNQLSGAIPASLGELDTLMRVDLSFNSLFGSIPVRLANAPRLEILDIRNNSLSGHVPTALKRLKSEFQYINNPGLCGTGFANLGSCKVVSSLNPNRPEPFEASSLSTKDLPASVDPTPKNCSETHCTKPLSFSKLGLVFGVVGVIVASTVACLFVLLWYRRQKQKIGSTVDTSDSRLSTDQIKAVCRKSASPLISLEYSNGWDPLAKGRGGYSQELLESLMFNLEEVECATQCFSDVNFLAKSNFSAIYKGILRNGSLVAIKCIAKTSCKSDETEFLKGLKILTSLKHENLVRLRGFCCSKGRGECFLIYDFVPNGSLSQYLDVKNGHGKILEWSTRVSIIQGIAKGIGYLHGKKGSKPALVHQNISAEKVLLDARYNALLSDGGLHKLVADDVVFSTLKASAAMGYLAPEYTTTGRLTEKSDVYAFGVIVFQLLTGKSDITQLNHHGVAETFSFKDLADANLGGKFSESEAAKLGRIALLCTHESPHCRPSMEYVLQELGDNISCSRQ 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1081 680 Gene3D Ribonuclease Inhibitor 78 267 IPR032675 -
Glsi06g1081 680 Gene3D Ribonuclease Inhibitor 16 77 IPR032675 -
Glsi06g1081 680 Gene3D Transferase(Phosphotransferase) domain 1 485 677 - -
Glsi06g1081 680 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Glsi06g1081 680 ProSiteProfiles Protein kinase domain profile. 405 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi06g1081 680 FunFam Protein NSP-INTERACTING KINASE 2 377 483 - -
Glsi06g1081 680 CDD STKc_IRAK 411 671 - -
Glsi06g1081 680 Pfam Protein tyrosine and serine/threonine kinase 411 671 IPR001245 GO:0004672|GO:0006468
Glsi06g1081 680 FunFam Leucine-rich repeat receptor-like kinase 26 133 - -
Glsi06g1081 680 FunFam Protein NSP-INTERACTING KINASE 2 136 258 - -
Glsi06g1081 680 Gene3D Phosphorylase Kinase; domain 1 382 483 - -
Glsi06g1081 680 SUPERFAMILY Protein kinase-like (PK-like) 386 671 IPR011009 -
Glsi06g1081 680 SUPERFAMILY L domain-like 26 236 - -
Glsi06g1081 680 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 70 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1081 Glsi-ChrGlsi06 15079476 15085070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1081 1 518 Miscellaneous Gene Families AT4G22730 50.375 2.63e-176 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Glsi06g1081 PK_Tyr_Ser-Thr 4.9e-38 CL0016