Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1056 ATGGAAGCCAGAGAAGGTATCAGTTCAGGGGTTACGGTGATAGGAGCAGAAGCCCCATCAGCCTATCACGTGGCACCAAGGAGTGAAGCTCCAAGCCAGAGTCATGTTCCTGCAGTACCAGCAGCAGCAACTGTTGGTGCTTCACCGGTGAGTGTGGGATTGGATGGAACAGCAGTTAAGAAGAAACGAGGTAGACCAAGAAAATATGGGCCAGATGGCTCGGTGTCTATGGCATTGTCACCATTGCCAATATCATCTTCGGCTCCACCTTCTAGTGACTTCTCAACTGGGAAGCGGGGCAAATCCAAAGGAATGGAATACAAGCAGCATAAAAAAGTTGGGTTGGAGCATTTAGGTGACTTGTGTTCTATTGGTACAAACTTTATGCCCCATATCATCACCGTCAATGCTGGCGAGGACATTACAATGAAGGTTATATCATTTTCTCAACAAGGACCCCGAGCTATATGCATCCTATCTGCTAATGGTGTAATTTCAAATGTGACACTTCGGCAGCCTGACTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACGAGAAGCAGGTCAGGTGGAATGAGCGTCTCTTTGGCAAGTCCTGATGGTCGTGTTGTAGGCGGTGGAGTTGCTGGTCTTCTTATTGCCGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAACCAGCAAGATCAGAAACCAAAGAAGTCGAAGTCTGATTATGCACTGGCTACTTCTGCCCCCATTGCAGTGTCTTCTGCACCGCCTCCGCCACCGCCACCACCCCCCTCAACCAATGCTGAAAAAGACGATGGCATGGGTGGTGGAGGTGGACATGTACTGCAAAATTCTCCTACTCTCAACTCCAACCTGACTTCTCCCTCAGCCTTTCGACGAGACAACTGGGTGAATATACACTCTATGTCTGTGCCGGACTCGAGACAGTCAGCTACAGATATTAACATATCTTTGCCTGATAACTAA 1041 0.488 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPSQSHVPAVPAAATVGASPVSVGLDGTAVKKKRGRPRKYGPDGSVSMALSPLPISSSAPPSSDFSTGKRGKSKGMEYKQHKKVGLEHLGDLCSIGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQDQKPKKSKSDYALATSAPIAVSSAPPPPPPPPPSTNAEKDDGMGGGGGHVLQNSPTLNSNLTSPSAFRRDNWVNIHSMSVPDSRQSATDINISLPDN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1056 346 MobiDBLite consensus disorder prediction 266 314 - -
Glsi06g1056 346 Gene3D - 130 260 - -
Glsi06g1056 346 MobiDBLite consensus disorder prediction 300 314 - -
Glsi06g1056 346 MobiDBLite consensus disorder prediction 326 346 - -
Glsi06g1056 346 MobiDBLite consensus disorder prediction 47 106 - -
Glsi06g1056 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Glsi06g1056 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 311 IPR039605 GO:0003680
Glsi06g1056 346 CDD DUF296 130 243 IPR005175 -
Glsi06g1056 346 MobiDBLite consensus disorder prediction 270 285 - -
Glsi06g1056 346 MobiDBLite consensus disorder prediction 79 98 - -
Glsi06g1056 346 FunFam AT-hook motif nuclear-localized protein 1-like 130 260 - -
Glsi06g1056 346 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Glsi06g1056 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1056 Glsi-ChrGlsi06 14263427 14271645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1056 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.526 1.98e-103 306
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi06g1056 06 14263427 14271645 Glsi07g1090 07 14809426 14816093 CCT
Glsi06g1056 06 14263427 14271645 Glsi06g1056 06 14263427 14271645 ECH