LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi06g1056	ATGGAAGCCAGAGAAGGTATCAGTTCAGGGGTTACGGTGATAGGAGCAGAAGCCCCATCAGCCTATCACGTGGCACCAAGGAGTGAAGCTCCAAGCCAGAGTCATGTTCCTGCAGTACCAGCAGCAGCAACTGTTGGTGCTTCACCGGTGAGTGTGGGATTGGATGGAACAGCAGTTAAGAAGAAACGAGGTAGACCAAGAAAATATGGGCCAGATGGCTCGGTGTCTATGGCATTGTCACCATTGCCAATATCATCTTCGGCTCCACCTTCTAGTGACTTCTCAACTGGGAAGCGGGGCAAATCCAAAGGAATGGAATACAAGCAGCATAAAAAAGTTGGGTTGGAGCATTTAGGTGACTTGTGTTCTATTGGTACAAACTTTATGCCCCATATCATCACCGTCAATGCTGGCGAGGACATTACAATGAAGGTTATATCATTTTCTCAACAAGGACCCCGAGCTATATGCATCCTATCTGCTAATGGTGTAATTTCAAATGTGACACTTCGGCAGCCTGACTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGACAACCAAGGAACGAGAAGCAGGTCAGGTGGAATGAGCGTCTCTTTGGCAAGTCCTGATGGTCGTGTTGTAGGCGGTGGAGTTGCTGGTCTTCTTATTGCCGCCAGTCCTGTGCAGGTGGTGGTGGGAAGTTTTCTACCAAGCAACCAGCAAGATCAGAAACCAAAGAAGTCGAAGTCTGATTATGCACTGGCTACTTCTGCCCCCATTGCAGTGTCTTCTGCACCGCCTCCGCCACCGCCACCACCCCCCTCAACCAATGCTGAAAAAGACGATGGCATGGGTGGTGGAGGTGGACATGTACTGCAAAATTCTCCTACTCTCAACTCCAACCTGACTTCTCCCTCAGCCTTTCGACGAGACAACTGGGTGAATATACACTCTATGTCTGTGCCGGACTCGAGACAGTCAGCTACAGATATTAACATATCTTTGCCTGATAACTAA	1041	0.488	MEAREGISSGVTVIGAEAPSAYHVAPRSEAPSQSHVPAVPAAATVGASPVSVGLDGTAVKKKRGRPRKYGPDGSVSMALSPLPISSSAPPSSDFSTGKRGKSKGMEYKQHKKVGLEHLGDLCSIGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPSNQQDQKPKKSKSDYALATSAPIAVSSAPPPPPPPPPSTNAEKDDGMGGGGGHVLQNSPTLNSNLTSPSAFRRDNWVNIHSMSVPDSRQSATDINISLPDN	346

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	266	314	-	-
	Glsi06g1056	346	Gene3D	-	130	260	-	-
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	300	314	-	-
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	326	346	-	-
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	47	106	-	-
	Glsi06g1056	346	Pfam	Plants and Prokaryotes Conserved (PCC) domain	130	243	IPR005175	-
	Glsi06g1056	346	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	31	311	IPR039605	GO:0003680
	Glsi06g1056	346	CDD	DUF296	130	243	IPR005175	-
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	270	285	-	-
	Glsi06g1056	346	MobiDBLite	consensus disorder prediction	79	98	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi06g1056	Glsi-ChrGlsi06	14263427	14271645	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi06g1056	6	273	AT-hook Motif Nuclear Localized (AHL) Family	AT4G12080	60.526	1.98e-103	306

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi06g1056	06	14263427	14271645	Glsi07g1090	07	14809426	14816093	CCT
	Glsi06g1056	06	14263427	14271645	Glsi06g1056	06	14263427	14271645	ECH

Showing 1 to 2 of 2 entries