Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi06g1049 ATGGATCCAGTAGCTGCACAAGGTCGTCCTCTTCCACCTCCTTTTCTTAGCAGAGATCTTCATCTTCACCCCCACCACCACAACTACCAGAACGCCGAAGACGAGCCGAGCGGTAATGGCAGCTTCGCCCGTGGCCAGAAGCGAGATCGAGATGAAAACCCCACCGCCAACACCGGCTGTGGCACGGTCATGGATGATGGCAGAGAATTAGGCTCGAGCTCAGCTCAAGGATCAGAGGGAGAGAACTCTAGAAGACCTCGTGGTAGACCTGCTGGCTCCAAGAACAAGCCCAAGCCTCCTATCATCATAACCCGCGACAGTGCCAATGCTCTCCGATCCCATGTCATGGAGATCGGAAACGGCTCCGATATCATGGACAGTATCGCCACCTTCGCACGACGAAGACAGCGCGGGGTTTGCATTCTGAGCGGGAGTGGCACTGTCACGAATGTTACTCTCCGGCAGCCGGCTTCGCCGGGTGCAGTTGTGACCTTACACGGGAGATTCGAGATTTTATCTTTGTCCGGCTCATTCCTGCCACCTCCGGCTCCACCTGCTGCATCGAGTCTGGCAATATATCTGGCTGGCGGTCAAGGTCAGGTGGTCGGAGGCACCGTGGTGGGTCCTTTGTTGGCATCAGGTCCGGTGGTTATTATGGCAGCTTCGTTTGGAAATGCGGCGTATGAGAGGCTACCGTTGGAGGAGGAGGAGACACCGGTGCCGGTCCCAGGAAGCGGAGGGTTAGGGTCACCGGGAATTGGAGGACAACAGCAGCAACAACAGGTGCAACAGCAACTAGTTCCAGATCCTAACTCGTCTCTATTTCATGGGGTGCCTCAAAATCTTCTGAATTCATGCCAATTACCTCCTGAAGGTTATTGGGGTGGTGGTAGCGTTCGCCCTCCTTTTTAA 912 0.5526 MDPVAAQGRPLPPPFLSRDLHLHPHHHNYQNAEDEPSGNGSFARGQKRDRDENPTANTGCGTVMDDGRELGSSSAQGSEGENSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIGNGSDIMDSIATFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASSLAIYLAGGQGQVVGGTVVGPLLASGPVVIMAASFGNAAYERLPLEEEETPVPVPGSGGLGSPGIGGQQQQQQVQQQLVPDPNSSLFHGVPQNLLNSCQLPPEGYWGGGSVRPPF 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi06g1049 303 MobiDBLite consensus disorder prediction 235 274 - -
Glsi06g1049 303 MobiDBLite consensus disorder prediction 251 274 - -
Glsi06g1049 303 FunFam AT-hook motif nuclear-localized protein 111 238 - -
Glsi06g1049 303 PIRSF ESCAROLA 16 301 IPR014476 GO:0003680
Glsi06g1049 303 MobiDBLite consensus disorder prediction 1 102 - -
Glsi06g1049 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 108 244 - -
Glsi06g1049 303 ProSiteProfiles PPC domain profile profile. 108 244 IPR005175 -
Glsi06g1049 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 112 224 IPR005175 -
Glsi06g1049 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 46 273 IPR014476 GO:0003680
Glsi06g1049 303 Gene3D - 111 240 - -
Glsi06g1049 303 CDD DUF296 112 178 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi06g1049 Glsi-ChrGlsi06 13981557 13982468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi06g1049 1 303 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 56.766 1.67e-85 256